Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01305 ATGATGGGGTCATTTTCCATTGCTTCAAAGGGTGTGATTGTGGGTATGTTTGTGATTGTTCTTGTGGTTTGGGAAGTTGGGGCAGCCGGGGAATGTGGGAAGACGCCCATAGAATCGGCGGCGATGGGGCTGACGCCGTGCCTGGGGGCGGTGAGGGATGTAAAAGCAAAGGTTACGGGGGCGTGCTGCAGCAAAGTGGGGGCGATGTTTAATAGTTCGCCAAAATGCCTTTGCGCCATTCTTTTATCGCCGTTGGCTAAGCAAGCGGGAATAAATCCGGGCATTGCTATTACAATCCCTAAACGTTGTAATATTCGAAACCGTCCCAAAGGAAAGAAGTGTGGGAAGTACACTCTCCCTTGA 363 50.96 MMGSFSIASKGVIVGMFVIVLVVWEVGAAGECGKTPIESAAMGLTPCLGAVRDVKAKVTGACCSKVGAMFNSSPKCLCAILLSPLAKQAGINPGIAITIPKRCNIRNRPKGKKCGKYTLP* 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13870604 13872563 - CsaV3_5G017280.1 Csa05g01305 529692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01305 120 Gene3D - 38 111 IPR036312 -
Csa05g01305 120 Pfam Probable lipid transfer 28 114 IPR016140 -
Csa05g01305 120 CDD AAI_LTSS 44 105 - -
Csa05g01305 120 PANTHER LIPID BINDING PROTEIN-RELATED 13 120 IPR039265 GO:0005504|GO:0009627
Csa05g01305 120 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 40 109 IPR036312 -
Csa05g01305 120 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 4.1 13 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01305 - - - csv:101207781 239.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01305 Csa-Chr5:13870604 Csa06g00147 Csa-Chr6:953846 5.94E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g571 . . . . . . . . . . . . . . . . Cpe01g01869 . . . . . . . . . . . . . . . . . Cone9ag0366 . . . . . . . . . . . . . Cmo04g02253 . Cma04g02156 . Car04g02091 . . . . . . . . . . Cla01g00672 Cam01g0704 Cec01g0698 Cco01g0725 Clacu01g0692 Cmu01g0667 Cre09g1840 . Csa05g01305 Chy09g00460 Cme09g01268
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013659 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 0 3 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01305 Csa_Chr05 FPKM 25.631004 27.015392 31.209146 30.963844 27.828648 25.817915 24.044559 16.088362 15.63921 17.133291