Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01306 ATGGTGTTCTCCAAAACTTTCTCTGAATCCGATGTTTCCATACACTCCACTTTCGCCTCTCGCTACGTTCGGGACTCAGCTCCACGTTTCACCATGCCCGATAACTCCATGCCCAAGGAAGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCCAGGCTCAATCTAGCCTCCTTCGTCACCACTTGGATGGAGCCCGAATGTGATAAGCTCATTATGGACTCTGTCAATAAAAACTACGTCGACATGGACGAATACCCCGTCACTACCGAGCTTCAGAACCGTTGTGTCAACATGATTGCACATCTCTTTAATGCACCCTTGGGAGACTCTGACGCCGCTGTTGGTGTCGGAACGGTGGGGTCGTCCGAGGCCATCATGTTGGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAAAGGAAGGCGGAAGGGAAGCCTTATGACAAACCAAATATTGTGACGGGTGCTAATGTTCAAGTTTGTTGGGAGAAATTTGCAAGATACTTTGAGGTTGAGTTGAAGGAAGTTAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCCGTTGAGATGGTGGATGAGAACACTATTTGTGTTGCTGCCATTTTGGGGTCAACTTACAATGGGGAATTTGAAGACGTGAAGCTGTTGAACGATTTGCTGGTGGAGAAGAATAAGGAAAGTGGATGGGATACGCCTATTCATGTGGATGCTGCCAGTGGTGGGTTCATAGCTCCATTTTTGTACCCAGAGCTTGAATGGGACTTCAGGCTTCCTTTAGTGAAGAGTATCAACGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTGATCTGGAGAACCAAAGAAGATTTGCCTGAAGAACTCATTTTCCACATCAATTACCTTGGAGCGGATCAACCCACTTTCACTCTCAACTTCTCCAAAGGATCAAGCCAAATCATTGCTCAATATTATCAACTAATCCGGTTGGGTTACGAGGGATACCGAAACGTGATGCAGAATTGTCACGACAATGCAATGGTGTTGAAGGAAGGGCTTGAAAACACAGGGAGGTTCACCATAGTGTCAAAGGACATGGGAGTGCCAGTAGTGGCATTTTCCCTCAAAGACCGAAGCCGCCACGACGAGTTTGAGGTGTCAGAGATGTTGAGGCGATTCGGGTGGATTGTCCCAGCTTATCCAATGCCAGAGGGAGCGAAGCATGTGTCGGTTCTTCGTGTGGTGATTAGAGAAGATTTCTCTCGCACGCTCGCGGAGCGACTTGTGCTCGATATCGTAAAGGTATTGGCAGAGCTAGACACTCTTCCACCAAAGAAGGGTGAAAAAATGGAGAGCTTAGAGAATGGTAAAAAGGAAACGAGTGGGAAGAAGAGTGCAGAGGAGACAGAGAGGGAAATAGCAACTTATTGGAGGAATATAACGAATGCTAGGAAAATCAAGCTTGCTGCTACTATGGCGGGTCCTTCGGTTACAGTAGTTGCCAAATAA 1524 47.57 MVFSKTFSESDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYRNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKKGEKMESLENGKKETSGKKSAEETEREIATYWRNITNARKIKLAATMAGPSVTVVAK* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13877689 13879871 - CsaV3_5G017290.1 Csa05g01306 529693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01306 507 Gene3D - 1 65 - -
Csa05g01306 507 PANTHER GLUTAMATE DECARBOXYLASE 1 491 - -
Csa05g01306 507 PANTHER GLUTAMATE DECARBOXYLASE 1 491 IPR010107 GO:0004351|GO:0006536|GO:0030170
Csa05g01306 507 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Csa05g01306 507 MobiDBLite consensus disorder prediction 451 474 - -
Csa05g01306 507 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Csa05g01306 507 CDD DOPA_deC_like 59 439 - -
Csa05g01306 507 Gene3D - 66 360 IPR015421 GO:0003824
Csa05g01306 507 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Csa05g01306 507 Gene3D - 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01306 Csa-Chr5:13877689 Csa05g01309 Csa-Chr5:13903775 0 dispersed
Csa05g01306 Csa-Chr5:13877689 Csa05g01308 Csa-Chr5:13901705 1.22E-09 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01306 K01580 - csv:101208026 1021.92