Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01309 ATGGTGCTCTCTAAAACTTTCTCTGAATCTGATGTTTCCGTACACTCCACATTCGCCTCTCCCTACGTTCGGAACTCTGCTCCAAGGCTCACCATACCCAACAACTCCATGCCCAAAGATGTCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCCAGGCTCAATCTAGCCAGCTTCGTCACTACTTGGATGGAACCCGAATGTGATAGGCTCATCATGGACTCTATCAACAAAAACTACGTCGACATGGATGAATACCCCATCACTACTGAGCTTCAAAACCGTTGCGTCAACATGATTGCTAATCTCTTTAATGCACCCTTAGGAGACTCCGACGCCGCTGTCGGAGTTGGGACGGTGGGGTCGTCGGAGGCCATCATGCTAGCAGGGCTTGCGTTCAAGAGGAAGTGGCAGAACAAAAGGAAGGCGGAAGGGAAGCCTTATGACAAACCAAATATTGTGATGGGTGCCAATATGCAAGTTTGTTGGGAGAAATTTGCAAGATACTTTGAGGTTGAGTTGAAGAAAGTTAAAGTGAGAGAAGGGTATTTCGTGATGGACCCTGTTCAAGCCGTTGAGATGGTGGATGAGAACACTATTTGTGTTGCTGCCATTTTGGGGTCAACTTACAATGGGGAATTTGAAGACGTGAAGCTGTTGAACGATTTGCTGGTGGAGAAGAATAAGGAAAGTGGATGGGATACGCCTATTCATGTGGATGCTGCCAGTGGTGGGTTCATAGCCCCATTTTTGTACCCAGAGCTTGAATGGGACTTCAGGCTTCCTTTGGTGAAGAGCATCAATGTGAGTGGCCATAAGTATGGGCTTGTCTATGCTGGAATTGGTTGGGCAATTTGGAGAAGGAAAGAAGATTTGGCTGAAGAGCTCATTTTTTATATCAATTACCTTGGAGCGAATCAACCCACTTTCACTCTCAATTTCTCCAAAGGATCAAGCCAAATCATTGCTCAATATTATGAACTAATCCGGTTGGGTTACGAGGGATACCGAAACGTGATGCAGAATTGTCACGACAATGCAATGGTGTTGAAGGAAGGGGTTGAAAAAACAGGGAGGTTCAGGATAGTGTCAAAGGACATGGGAGTGCCAGTGGTGGCATTTTCTCTCAAAGACCGAAGCCGCCACGACGAGTTTAAGGTGTCAGAGATGCTGCGGCGGTTCGGGTGGATAGTGCCAGCGTATCCGATGCCAGAAGGGGCAAAGCACGTGTTGGTTCTTCGAGTGGTGATTAGAGAAGATTTCTCTCGCACGCTGGCGGACAGGCTTGTGGTGGATATCGTAAAAGTAATGGGAGAGTTAGATAGTAGTGTTCCTATTCCACCAATTCCAAAGAAGAGTGAGAAAATGGTGAGGTTGGAGAATGGTCAAAAGAAAAGGAGTGGGAAGAAGACGGGAGAGGTAACTACAAAGAGGGAAATAGGGGCTTATTGGGGGAATATAACAACTGGTACGAAAATCAAGCTTGCTGCCAATCTGGGTGGTCCTTCAGTTAATGTAATTGCCTAA 1539 46.85 MVLSKTFSESDVSVHSTFASPYVRNSAPRLTIPNNSMPKDVAFQIINDELMLDGNPRLNLASFVTTWMEPECDRLIMDSINKNYVDMDEYPITTELQNRCVNMIANLFNAPLGDSDAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVMGANMQVCWEKFARYFEVELKKVKVREGYFVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRRKEDLAEELIFYINYLGANQPTFTLNFSKGSSQIIAQYYELIRLGYEGYRNVMQNCHDNAMVLKEGVEKTGRFRIVSKDMGVPVVAFSLKDRSRHDEFKVSEMLRRFGWIVPAYPMPEGAKHVLVLRVVIREDFSRTLADRLVVDIVKVMGELDSSVPIPPIPKKSEKMVRLENGQKKRSGKKTGEVTTKREIGAYWGNITTGTKIKLAANLGGPSVNVIA* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13903775 13905408 + CsaV3_5G017320.1 Csa05g01309 529696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01309 512 PANTHER GLUTAMATE DECARBOXYLASE 1 497 - -
Csa05g01309 512 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Csa05g01309 512 CDD DOPA_deC_like 59 439 - -
Csa05g01309 512 Gene3D - 66 360 IPR015421 GO:0003824
Csa05g01309 512 Gene3D - 361 447 - -
Csa05g01309 512 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Csa05g01309 512 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Csa05g01309 512 Gene3D - 1 65 - -
Csa05g01309 512 PANTHER GLUTAMATE DECARBOXYLASE 1 497 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01306 Csa-Chr5:13877689 Csa05g01309 Csa-Chr5:13903775 0 dispersed
Csa05g01309 Csa-Chr5:13903775 Csa05g01444 Csa-Chr5:15677586 0 dispersed
Csa05g01308 Csa-Chr5:13901705 Csa05g01309 Csa-Chr5:13903775 4.10E-07 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01309 K01580 - csv:101214676 1028.85