Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01314 ATGGCGCCACTCATAATGGAGCTTCCCGTAATCAACGCCTTTCCCCCATTGCTCCCTTCTTCCTTATGCTCATGCCCATGTCCTTGTTCTTCAATTTCAATCCCTAGCCTCTTCTTCCACCGCAGGAAGATGTTTCTTAGGTTCCCTGAATATCGTAATTCCTATCCATTTCTGCATACTACACCCAACGCTTCTTTATCCAATGCTACTGGCAGGAGCAACAATGAGAGGGATATCTGGGATGATCATGAGTTCGTGGAGGTTATTGGCATTGGCAGTAGAAAGGAAGCCGTGCTTGATTTTTGTCTCGAGTCGGCTCTTATGACTTCCTCGCTGCGATTTTGGCAGATTGTAAAACATGATTCTTCAAAAGTGCAACTACTTCAGAGATTCGTTGAAAAAGATTACTCTCCAAGGATGATTGACGTTCCACTGTCACTACAATCATGTTCGAAGGCTGTTATACTTGTGGTTAGTGCTGGATATGGCTTTGATTACTCCGCAGCTGTTGATATGCTTAGAACTATAAGATCTGCAAATGGATTTACGGTTACAATTGTCTTAAAGCCTTTTAGCTTTGAAGGGAAAAGGCGCCAGGATGAGGTTAAACGTTTGGTAGGAAGGCTAAAGGAACATACAAGCTTTTTAATCGATATTGACACCGATAGACTACTTGAAAAGGACTTGGTGACTCTTGACGATGCTGTGAGGTCTGCAAATAATGCTGTCTTGTTGGCTATAAATTCAATGTCCATTGTCAAGTCTGAGATGATAATTAAGTTTGTAGATGAACCTCAAAATGATTTGAAAGAGCTTGGTGCTATGGACGTCATGGAAATTTTGGAGAATCTTAAAGAAGGAAAGATCGGATTTGGAGCTGGCCACAATTTCCGAACTTCAATCTTAAAGTCAATTTACGACTGCCCTTTCCTCACTGTGCATTTAAAGGATTTGAAAGGTATGGTTGTATGCATTGTGGCAAGCTCAAGTATTATTGATGACAATGATAAAAGTACCCTGTTGAAAACTTTTCGTGAAGTTACCACATATACAGGAAAAGTTATATTATCCACGATTCAAGATCTAAATATAGAGCCCAACTTTCTCATGACAACCGTCCTTATTGTTGGTTCGACAAAGCAGCAATCTTCCAAAAGTAGTAGCATTTTATCTAGATTGGCCCAGCGTTTCCCTTTGGTTTTTAAGCTTTTATGGAAGCCTCAAGAACTGTTGGTGGAAGCCGAGGAAAGCAATATGCCTGAAGATGCAAGTCCTTCCAATGTAAGACAGTCATCAGACTCAGAAGTGAATGTAACGAAAATTGCTTCAGAGGGCATAGATAAAGATTCTTATCATGGCACAGAACCTGAAAATTGCCAAACAACATCCAATGGCAGTGATTTAGTCAGTTCAAGTGATTCTGAGCAACTTGAGGCTGGACTGTTAGGAACTGACACGAATTCTTCTTTGCCTTTTAGCAATGGAATTAGTAGAGGAGCTTCTCTACGCAGAGATCCCCTCCACAGATGGAATTTGGGTCCAGGACATCAAATCGCACAGCAGTGGGCCAGAGAAAGAGCTGCTGATGCTGAGTTGGCTTCTGCACTTGACAATATAAGCATATTTGACCTCCCAGTCGGAGTGAGACCTTCGGAAGAGGTCCATGATAAAGATTTGCCAAATCCAGAGATGAAATATGAGAAGAAATCTAAAGCTTCAATTAGTACTTCCAGATTTTCGTCTCAGAATTCATTGACTGATGCAAGTTTAGAAGTGATTAAGGAATTTTACGATACCTCATCTGCATTTTTAAAAGGGAAATCTGCCGACATTCCTAAGAAGCAAGGACTTTTGTCTGTTCGTGCAGCATCGATGCTGGAAGCCGAGCGAGATTCACCTAAAAAGTGGAGTCCTGTAATGGAGCTGCAGTATAGAGGTGGCGTTTACAGGGGACGCTGCCAAGGAGGACTCCCCGAAGGAAAGGGCCGTCTAGTTCTTCCAGATGGGAGCATATATGATGGTATGTGGCGATATGGTATGAGATCAGGTCAAGGAACAGTCTACTTCAACAATGGAGATATGTTTCAGGGATCATGGAGGGATGATGTCATGCATGGAAAGGGATGGTTTTATTTCCACACAGGGGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCTTATGGAGAAGGTCGCTTTTACTCAAAGTCAGGTGATGTTCTTTTTGGTCATTTCCAAGATGGATGGCGTCATGGCGATTTTCTTTGCATTAATGTTGATGGTTCAAGATATATGGAAGTTTGGAATGAAGGTTATCTTATGGGACGTGAGAATTTGGACTCCGGTGCTGATACTGCATAA 2361 42.06 MAPLIMELPVINAFPPLLPSSLCSCPCPCSSISIPSLFFHRRKMFLRFPEYRNSYPFLHTTPNASLSNATGRSNNERDIWDDHEFVEVIGIGSRKEAVLDFCLESALMTSSLRFWQIVKHDSSKVQLLQRFVEKDYSPRMIDVPLSLQSCSKAVILVVSAGYGFDYSAAVDMLRTIRSANGFTVTIVLKPFSFEGKRRQDEVKRLVGRLKEHTSFLIDIDTDRLLEKDLVTLDDAVRSANNAVLLAINSMSIVKSEMIIKFVDEPQNDLKELGAMDVMEILENLKEGKIGFGAGHNFRTSILKSIYDCPFLTVHLKDLKGMVVCIVASSSIIDDNDKSTLLKTFREVTTYTGKVILSTIQDLNIEPNFLMTTVLIVGSTKQQSSKSSSILSRLAQRFPLVFKLLWKPQELLVEAEESNMPEDASPSNVRQSSDSEVNVTKIASEGIDKDSYHGTEPENCQTTSNGSDLVSSSDSEQLEAGLLGTDTNSSLPFSNGISRGASLRRDPLHRWNLGPGHQIAQQWARERAADAELASALDNISIFDLPVGVRPSEEVHDKDLPNPEMKYEKKSKASISTSRFSSQNSLTDASLEVIKEFYDTSSAFLKGKSADIPKKQGLLSVRAASMLEAERDSPKKWSPVMELQYRGGVYRGRCQGGLPEGKGRLVLPDGSIYDGMWRYGMRSGQGTVYFNNGDMFQGSWRDDVMHGKGWFYFHTGDRWFANFWKGKAYGEGRFYSKSGDVLFGHFQDGWRHGDFLCINVDGSRYMEVWNEGYLMGRENLDSGADTA* 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13931016 13960066 - CsaV3_5G017370.1 Csa05g01314 529701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01314 786 PRINTS Cell division protein FtsZ signature 181 202 IPR003008 GO:0005525
Csa05g01314 786 PRINTS Cell division protein FtsZ signature 275 296 IPR003008 GO:0005525
Csa05g01314 786 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 646 771 - -
Csa05g01314 786 Pfam MORN repeat 672 694 IPR003409 -
Csa05g01314 786 Pfam MORN repeat 695 717 IPR003409 -
Csa05g01314 786 Pfam MORN repeat 654 670 IPR003409 -
Csa05g01314 786 MobiDBLite consensus disorder prediction 455 475 - -
Csa05g01314 786 SUPERFAMILY Tubulin nucleotide-binding domain-like 88 251 IPR036525 -
Csa05g01314 786 SMART morn 670 691 IPR003409 -
Csa05g01314 786 SMART morn 647 668 IPR003409 -
Csa05g01314 786 SMART morn 693 714 IPR003409 -
Csa05g01314 786 MobiDBLite consensus disorder prediction 416 475 - -
Csa05g01314 786 Gene3D Tubulin/FtsZ, GTPase domain 124 378 IPR036525 -
Csa05g01314 786 PANTHER PROTEIN ACCUMULATION AND REPLICATION OFS PROTEIN 171 785 - -
Csa05g01314 786 Gene3D - 651 707 - -
Csa05g01314 786 MobiDBLite consensus disorder prediction 420 439 - -
Csa05g01314 786 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 171 785 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01314 - - - csv:101217933 1519.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01314 Csa-Chr5:13931016 Csa06g02355 Csa-Chr6:21116319 9.82E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1110 . . Bda01g01766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01940 . . . . Cmo15g00905 . Cma15g00870 . Car15g00817 . . Bhi12g01003 . . . . . Lcy10g1569 Cla01g00679 Cam01g0711 Cec01g0703 Cco01g0732 Clacu01g0697 Cmu01g0672 Cre09g1833 Lsi09g00736 Csa05g01314 Chy09g00454 Cme09g01260
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009880 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01314 Csa_Chr05 FPKM 16.049482 16.399551 12.531449 13.357249 14.357114 14.026694 13.667481 26.163296 25.480503 28.241133