Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01316 ATGGCCCTCTCTCCCTCTCCCGACTGCTCATTCCCTCCATCAAACTCTTTCAGAAAATCCCATTTCATCTCCACCTCTAACTTCTCTCTCCTTTTCTCTCTTCCCACTTCAAATCTTCCATCCCTTCATCTAAATTCCTCCGGTTGCCCTTCCCCAATCTTAGAACAACCCTCCATCGCATTACCCGACATCCATTCAAACTCCAATCTTCACGATTTTCAACTTCCCTCCTTGCCCAACGTTCAAGATTTGAACGATTTCTTATGTGGGTTGTCGCAAAACCCCGGAACCGAGGATTTGATCTATGACTATTATGTGAAAGCGAAGGAGACGGCTGGGTTTCGACCTCAGAAATCGACATTGCGGCATCTGATCAGGTACTTAGTTCGATTGAAGAAATGGGATTTGATTCTTTTAGTTTCTAGGGACTTTGTGGATTTTGGTGTTTGCCCTGATAGAGATACTTGTTCTAAATTGGTTAGTAGTTGTGTTAGAGGTAGAAAATTTAAAGTTGTCAAGTCTTTGCTTGAGGTTTTTGAAAGGGATAGTGGTGTTGCTATGACTGCTTTTGAAGCTGCCATGAGAGGCTACAATAAGCTTCACATGCACAAAAGCACTATCATGGTTTTCCAGCGCTTGAAATCTGCAAGAATCGAAGCAGATTCTGGATGTTATTGTAGGGTCATGGAAGCCTATCTTAAACTTGGGGATTCTGAGAGAGTTATGGAACTGTTTAATGAAGTGGAGAGTAGGATTTCGGTTTCTACGCCATTTTCGACCAAGATTTACGGGATACTTTGCGAGTCCTTAGCAAAGTCGGGGAGGGTTTTCGAGTCGCTTGAGTTTTTTAGAGATATGAGGAAGAAAGGGATCGCAGAAGACTACACTATTTACTCTGCTTTGATATGTACTTTTGCTAGCATCCAGGAAGTTAAATTAGCGGAAGATCTTTACAATGAAGCAAAAGCCAAGAAGTTGTTGAGGGACCCTGCGATGTTTCTAAAGCTCATATTGATGTACGTTCAACAAGGATCATTAGAAAAGGCACTTGAGATTGTTGAAGTAATGAAAGACTTTAAAATTGGAGTCTCTGACTGTATTTTCTGTGCAATTGTCAATGGTTATGCCACGAGAAGGGGCTATGAAGCTGCAGTTAAAGTTTACGAGAAGTTGATCGAAGACGGATGTGAGCCAGGACAAGTGACGTACGCCTCAGCAATCAATGCCTACTGCCGTGTCGGACTCTACTCGAAAGCAGAGGACATTTTTGGAGAAATGGAGGAGAAAGGGTTTGATAAATGTGTGGTAGCTTACTCTAGCTTGATATCAATGTATGGAAAAACAGGGAGATTAAAGGATGCAATGAGGCTATTAGCAAAGATGAAAGAAAAAGGGTGTCAGCCAAATGTTTGGATATACAACATATTGATGGAGATGCATGGGAAGGCTAAGAATTTGAAGCAAGTTGAGAAGTTATGGAAGGAAATGAAGCGCAAAAAGATAGCACCTGATAAGGTTAGCTATACAAGTATCATAAGTGCCTATGTCAAGGCATCAGAATTCGAAAAGTGCGAGCAATATTACCGGGAGTTTCGGATGAACGGGGGCACCATTGACAAGGCATTTGGGGGGATCATGGTTGGGGTGTTCTCAAAGACGAGTCGGGTTGATGAGCTGGTGAAGCTTCTCAGAGACATGAAGTTAGAAGGAACAAGGCTGGATGAGAGGCTTTATAGGACAGCATTGAATGCTCTGATGGATGCTGGGTTGCAAGTGCAAGCAAAATGGTTGCAAGATCATTATGCTGGAAAATCAGGCTTTGTTTAA 1827 42.42 MALSPSPDCSFPPSNSFRKSHFISTSNFSLLFSLPTSNLPSLHLNSSGCPSPILEQPSIALPDIHSNSNLHDFQLPSLPNVQDLNDFLCGLSQNPGTEDLIYDYYVKAKETAGFRPQKSTLRHLIRYLVRLKKWDLILLVSRDFVDFGVCPDRDTCSKLVSSCVRGRKFKVVKSLLEVFERDSGVAMTAFEAAMRGYNKLHMHKSTIMVFQRLKSARIEADSGCYCRVMEAYLKLGDSERVMELFNEVESRISVSTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRTALNALMDAGLQVQAKWLQDHYAGKSGFV* 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13971662 13974023 - CsaV3_5G017390.1 Csa05g01316 529703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01316 608 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 1 602 - -
Csa05g01316 608 TIGRFAM PPR: pentatricopeptide repeat domain 401 431 IPR002885 -
Csa05g01316 608 TIGRFAM PPR: pentatricopeptide repeat domain 506 535 IPR002885 -
Csa05g01316 608 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Csa05g01316 608 TIGRFAM PPR: pentatricopeptide repeat domain 367 398 IPR002885 -
Csa05g01316 608 TIGRFAM PPR: pentatricopeptide repeat domain 436 470 IPR002885 -
Csa05g01316 608 SUPERFAMILY HCP-like 332 475 - -
Csa05g01316 608 Gene3D Tetratricopeptide repeat domain 426 499 IPR011990 GO:0005515
Csa05g01316 608 Gene3D Tetratricopeptide repeat domain 500 570 IPR011990 GO:0005515
Csa05g01316 608 Pfam PPR repeat 336 360 IPR002885 -
Csa05g01316 608 Pfam PPR repeat 225 250 IPR002885 -
Csa05g01316 608 Pfam PPR repeat 268 291 IPR002885 -
Csa05g01316 608 Pfam PPR repeat 506 535 IPR002885 -
Csa05g01316 608 Pfam PPR repeat 545 570 IPR002885 -
Csa05g01316 608 Gene3D Tetratricopeptide repeat domain 189 265 IPR011990 GO:0005515
Csa05g01316 608 Gene3D Tetratricopeptide repeat domain 77 188 IPR011990 GO:0005515
Csa05g01316 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Csa05g01316 608 PANTHER OSJNBA0088A01.11 PROTEIN 1 602 - -
Csa05g01316 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Csa05g01316 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Csa05g01316 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Csa05g01316 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Csa05g01316 608 Pfam Pentatricopeptide repeat domain 422 482 IPR002885 -
Csa05g01316 608 Pfam Pentatricopeptide repeat domain 368 410 IPR002885 -
Csa05g01316 608 Gene3D Tetratricopeptide repeat domain 266 423 IPR011990 GO:0005515
Csa05g01316 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01316 - - - csv:101217940 1213.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01316 Csa-Chr5:13971662 Csa01g03394 Csa-Chr1:30684313 3.78E-21 dispersed
Csa05g01316 Csa-Chr5:13971662 Csa07g01683 Csa-Chr7:17314741 3.15E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0676 . . . . . . . . . . . . . . . . . Cmo15g00902 . Cma15g00867 . Car15g00816 . . Bhi12g01005 . . . . . Lcy10g1566 Cla01g00682 Cam01g0715 Cec01g0706 Cco01g0736 Clacu01g0701 Cmu01g0673 Cre09g1832 Lsi09g00740 Csa05g01316 . Cme09g01257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013247 0 3 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01316 Csa_Chr05 FPKM 16.92647 17.782076 31.422947 31.395346 28.651337 21.440195 29.893658 23.939501 23.270418 30.396713