Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01335 ATGGAAAAGGAATCAAAGGGCTCTTGTGTAAGAGAGTTCATCAGGGAAAAAGTCCCAGACTGGGATGACGAAGTGGTGGCTACAGCCCGGTTTAAGGCATTTAGTGGGCAGAAATCTGATTGGGAACCCAGGTACTTATTTTGGAGAGATTTGATACTCACAGTTGCCCGTCAATTCAACTTCCTTATTATAAAACCTTCTGAAATAAAGAATCAATGGTTTTATCGAGGAGGGTTGACTCCATTGTGCCTTGACCATGTTCTGCATCTAATGTATACTGGGGGGGACATCATAAGACGTAGTGACATGCTGGATCCAAGGAGTGGCCAACTCTCCTACATGTTTAAAAAATTAAGCAATTTGATGGGTACATCTAAAAAGAATCCTGACAGTTTGCTTCGTGATGATTATATAGTTCTTGCCTGTGTATTACAGGATAGAGCAGCTGAAGTTATCAAGTGTTTATCTCTTAGTAGTTGGACCTCGTCTTGTATTATTACAATGGTGAAGTTCCAAAACATCTGTGGAGGACCTGATGAAGCAACTGTTATCTTGAGTTACTTGATTGAGTGTGGTAAAGCAAAATTTCTCTCCAAGGAAAAAAAGGAACTTTTAGAGGGTGTGAAGGTCTCTCTTTCAGCAACGACAGTTCCTGGAATCACATCTCTCGATTATGATATTTTGCACTTAGTTTGGACAGCAGAAAAGCTTCAGCAACAACTTGATGTGATTGACCAGCGCTATGATGTGTCGAAACAATCCGCATTAGTTTCTTTGAAGTCTGGAAACAGAAAAACCGCATTGAAACATGCGAGAGAGTTGAAGATCACCACAGAAAGTCGGGAAAAAGTTGCATCTCTCTTCAACAGAGTGGAGGAAGTCCTTAATGCTATTGCAGACGCCGAATTGACAAAAACAGTTTCTGAGGCTATTCAAATTGGTGCTCGAGTAATGAAAGAACACGAGGTTAATTGGGATCAACTCCAGGATAGTTTGCAGGAACTAGAAGCAAGCGTTGATATACAAAAGCAAGTTGCAAATGCTATAGATTCAGTTCCATCTTCCTCAATCCCGGATGATGAAGATATTGAGGAGGAGTTTAAGAAGCTTGAGTTGGAATTAACAGCAGGCCAAATCCTGGATGCATCGACATCAGAATCTGGGGTTAATATTGCAACTGGTGAAACAGTGGCTGCAGTTTGTGACGATTCATTAAGCACTGCGTTATCAAATCTAAAGCTAGTTGAAGAGACAGAAAAGGAGAATGGGAACTCATCGCATTCTAAGAGGAAGTCGAAAATCATGGAGCTCCGGCCGCCACTCCGGCCACTTCAGCTGAGCCCCAATACATCAGGGCTAAGACTTCTGTTTGGTGGGACATCGAGAACTGTCAGGTCCCTAAGGGATGTGATCCTCACGCCATCGCCCAAAACATCAGTTTCTGCCCTCGTCAAAATCAACTATTGTGGCCCTGTCTCCATTTCCGCTTATGGGGATACCAATCGCATTCCTAATTCTATTCAGCAGGCTCTTTCTAGTACTGGCATCGCTTTGAATCATGTTCCTGCTGGTGTTAAAGATGCAAGTGATAAGAAGATTCTAGTCGATATGTTGTTTTGGGCAGTTGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCGGGTGATAGGGATTTTTCTAACGCACTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCGCAGCCACAAAAGGCTTCTGCACCACTAGTAGCAGCAGCAAAGAGTGTTTGGCTTTGGATGAGTCTTGTAGCTGGTGGACTTCCAATATCCAGTACTGAATCATCTCAACTTGTGAATGGTATCCCTACTTCTGAACCTCAAATATCTCAGACCTCTGGATTTGATCATAATCAGCACACAGGACAAGCTATAGTATACAAACCTGAAAATGTCAATTTGGGTAACCAAAGATCTTATTCTACCGAGAGGATGGGTGACAATAAACATAAAGGTAAATATGTACAGAAAAACTCCAACCAACCAGTTATATCCAGAGCTTTAAGCTCACCTGCGTCTATGCAAGAGAAAAACCCTAATTTTTTAAACCAACCAAATCATATGCAAGCAAAGCAGTTTAAGAAAGCACCCCATGAATTCTTTGGAAATGGCAATCCTGTAGGCTCTTCTAGTCAATCCATTCCAAACTTGTTTATTGAAAATTCCAGCCATGCTAGGATTGATGGCAATGGTTCAATGGGTAGTTCCTCATGTTACCAACCTTCTCACCTGGCTCATGCTAGGTCTGATGGCAATATTTCAATGAGTAATTCCTCAAGTTACCAACCTCCTCATATGAGGCAAAACAACATGCAGCTCCATCCTCCTTTTCGACCGGATAATGTTTTTCCTCCTAACTCTCTTAATCATAATCCTTTTCCAGTCCTTGGTCAACCTGATCTCCCTGCACCCAATATTAGTCAGCTACATATCTCTGATTATCCCAATTATCCTATAAATCCTCAAAATTTCCATCAACAAACTGGTGAATTTAGACCACATTCTAAGTCTCAAAATCCTGCTAACTTTAATGCCCCTGACAAAAGCCGTAGTCATCATGGTGGCCAATCATTCCATCATGATGCATTGAATAAAAGACATGCCCGTGATGCAGTAGAGTATACACCTCATTCATCTTTTACCACTGTTACTAGAAGTTTATCTCATAACGATGGCTGGGGATCTCAGGGGCAACCACCACCATCAGAGTACATTCAAGGCCTCATTGGAGTTATTCTTCTTGCATTGAACACCCTGAAAGTGGAAAAAATTATGCCAAAGGAGGAAAATATAGCTGAGTGCATACGATATGGAGATTTGAGAAACTGCAATACTGATGTAAAAATGGCACTAGATAGTGCGATAGAGCATAATATGGTAGTGAAGCAGGAGATAGGAGAACTGCAACTGTATGTTGGTAAAACAGAAAAACTGTGGAAATGTGTGAACCCTCTAGGTGGGTATCCTAATCAGTACCCAAAAGCCATATGGGATAAGATTCATTATTTTTTAGCTTCTCCAGCTGGTCGTTCTGCAATGATGGCTTCACGTTGCAGATATGAAGCAGCATTGATTCTGAAGAAAGAATGCTTAACAGATTTTGCTTTGGGCGATGTGCTTCAGATTTTGCATATGATAACCTCCATGAAGAAATGGATTACTCATCATAATTCAGGATGGCAGCCAATTAATATTATACTAGCAGAAGGTAATACAGATGCAAGTTCAAGAACTGAACTTGATTGA 3291 40.99 MEKESKGSCVREFIREKVPDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQFNFLIIKPSEIKNQWFYRGGLTPLCLDHVLHLMYTGGDIIRRSDMLDPRSGQLSYMFKKLSNLMGTSKKNPDSLLRDDYIVLACVLQDRAAEVIKCLSLSSWTSSCIITMVKFQNICGGPDEATVILSYLIECGKAKFLSKEKKELLEGVKVSLSATTVPGITSLDYDILHLVWTAEKLQQQLDVIDQRYDVSKQSALVSLKSGNRKTALKHARELKITTESREKVASLFNRVEEVLNAIADAELTKTVSEAIQIGARVMKEHEVNWDQLQDSLQELEASVDIQKQVANAIDSVPSSSIPDDEDIEEEFKKLELELTAGQILDASTSESGVNIATGETVAAVCDDSLSTALSNLKLVEETEKENGNSSHSKRKSKIMELRPPLRPLQLSPNTSGLRLLFGGTSRTVRSLRDVILTPSPKTSVSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWMSLVAGGLPISSTESSQLVNGIPTSEPQISQTSGFDHNQHTGQAIVYKPENVNLGNQRSYSTERMGDNKHKGKYVQKNSNQPVISRALSSPASMQEKNPNFLNQPNHMQAKQFKKAPHEFFGNGNPVGSSSQSIPNLFIENSSHARIDGNGSMGSSSCYQPSHLAHARSDGNISMSNSSSYQPPHMRQNNMQLHPPFRPDNVFPPNSLNHNPFPVLGQPDLPAPNISQLHISDYPNYPINPQNFHQQTGEFRPHSKSQNPANFNAPDKSRSHHGGQSFHHDALNKRHARDAVEYTPHSSFTTVTRSLSHNDGWGSQGQPPPSEYIQGLIGVILLALNTLKVEKIMPKEENIAECIRYGDLRNCNTDVKMALDSAIEHNMVVKQEIGELQLYVGKTEKLWKCVNPLGGYPNQYPKAIWDKIHYFLASPAGRSAMMASRCRYEAALILKKECLTDFALGDVLQILHMITSMKKWITHHNSGWQPINIILAEGNTDASSRTELD* 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14113984 14125628 + CsaV3_5G017580.1 Csa05g01335 529722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01335 1096 MobiDBLite consensus disorder prediction 745 779 - -
Csa05g01335 1096 PANTHER LIMKAIN B LKAP 481 1079 IPR024768 GO:0005777|GO:0010468|GO:1903231
Csa05g01335 1096 Pfam NYN domain 489 590 IPR021139 GO:0004540
Csa05g01335 1096 Pfam OST-HTH Associated domain 1031 1086 IPR025677 -
Csa05g01335 1096 Gene3D - 470 597 - -
Csa05g01335 1096 MobiDBLite consensus disorder prediction 835 866 - -
Csa05g01335 1096 MobiDBLite consensus disorder prediction 835 877 - -
Csa05g01335 1096 CDD PIN_limkain_b1_N_like 481 578 - -
Csa05g01335 1096 Pfam Snf7 233 380 IPR005024 GO:0007034
Csa05g01335 1096 MobiDBLite consensus disorder prediction 416 435 - -
Csa05g01335 1096 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 481 1079 - -
Csa05g01335 1096 Coils Coil 318 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01584 Csa-Chr2:14975155 Csa05g01335 Csa-Chr5:14113984 3.31E-28 dispersed
Csa03g01862 Csa-Chr3:14344541 Csa05g01335 Csa-Chr5:14113984 1.10E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01335 - K15053 cmo:103503825 1167.91