Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01353 ATGAATGGGAAGGATGAATTTGAAGTTGAGAATAGGACGAGTGATCCTATGAGTATCTCCTCCGCCTGGCAATTTGCTGCTCCTAATCTTACTAATGAGTCAGTGGGATTTGATTCGACCGGGAATCCTTCTGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCAACCTCAATGTCTAACTTATTCACTCCAGCGCTTTTGAACCATCATACGGAATCGCAAAATTCAGGGTTCTGCACCACTTTCAATGAACAAAACAGTATAGTTACTTCTAATACGACTTTAGTTGATGGAGAGGATCTTAATTCTTTGAGATCAAATGGTGATACTAGAACACTGGGTATGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTTTCAGGAAACGTTCCTGGAATATTTCCACCTAATTTGTCTCAACTTCCAGCTGATTCAGCATTCATAGAACGTGCAGCAAGGTTCTCCTGCTTCAATAACGGAGTTTTTGGGGCTCCGCCTGCAGGTCCATTCGGCATTTCAGACTCTTTAGGCATTCATTCTGGGGGTGGATTTGGAAGGCAAGAAGTTATTTCAAGAAATGGAGTCTCCAAAGATGTATCTTTGCCCATGGAACTTGAGGCTGAAGAAAAGAGTCCACCTAAGAATGAGAAAGACAGTGAAATGTCTCAAGACCGGGCTAAACAGGGTTGTGTTGGTGAGTCTGGCAATGATTCTGATGAAGCTGGGTTCAGCGGTGGTCAAGATGAGCAATGCACGATGGGAGGTACCATGACAGAACCATCTACAGAAGGACTGTGCTTTAAGAAAAGGAAAAGGGGTGAGCAGAATGTGGGACTTGGACAAGTTAAAGAAGCTCCGCAACAAATCAATGAAACTGCAAAGAACGGAGCATTTAATCAGCAGAAGGGAGGCCAAAACCCAAGTTCTACTACTAGCAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAAGAAGAATACATTCATGTTAGAGCTCGAAGAGGACAGGCAACCAACAGCCATAGTCTTGCTGAAAGGGTTAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCTGGGTGTAGTAAGGTCACCGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCACTGCAACGACAAGTTGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTCGATTTTAACATCGAAGAGCTCCTCACAAAAGAATTCATTCAATCCAAGGCTGGTCCATCCCTGTTTGGTTTTCCTCCTGATATGCCCGTGCCTTACCTCCCTCAACATTCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTACAATGGGGAGCTCTCCGGACCTGCTACGAAGAGCAATTAATTCCCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTGCCAAACCGATGGGAGAATGAACTCCACAATGTTGTCCCAATGAACTTTGATGTCTCCGCACCCTCCAGTGGTCAAGATGTTGATGGTTCTAATCCACAATGCAACACCAGAGCAGAACTCTAA 1602 44.32 MNGKDEFEVENRTSDPMSISSAWQFAAPNLTNESVGFDSTGNPSVVSNGDLGVSSCPSTSMSNLFTPALLNHHTESQNSGFCTTFNEQNSIVTSNTTLVDGEDLNSLRSNGDTRTLGMDWNQQNPWMKGVFSGNVPGIFPPNLSQLPADSAFIERAARFSCFNNGVFGAPPAGPFGISDSLGIHSGGGFGRQEVISRNGVSKDVSLPMELEAEEKSPPKNEKDSEMSQDRAKQGCVGESGNDSDEAGFSGGQDEQCTMGGTMTEPSTEGLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGGQNPSSTTSKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEFIQSKAGPSLFGFPPDMPVPYLPQHSSHHGLIPPCLPTMGSSPDLLRRAINSQLTSLVGGFKEPVQLPNRWENELHNVVPMNFDVSAPSSGQDVDGSNPQCNTRAEL* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14293739 14297926 - CsaV3_5G018750.1 Csa05g01353 529740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01353 533 MobiDBLite consensus disorder prediction 301 334 - -
Csa05g01353 533 MobiDBLite consensus disorder prediction 207 229 - -
Csa05g01353 533 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 40 531 IPR024097 GO:0006355
Csa05g01353 533 CDD bHLH_AtBPE_like 337 422 - -
Csa05g01353 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
Csa05g01353 533 MobiDBLite consensus disorder prediction 301 328 - -
Csa05g01353 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 416 IPR036638 GO:0046983
Csa05g01353 533 SMART finulus 353 403 IPR011598 GO:0046983
Csa05g01353 533 MobiDBLite consensus disorder prediction 196 271 - -
Csa05g01353 533 Pfam Helix-loop-helix DNA-binding domain 350 398 IPR011598 GO:0046983
Csa05g01353 533 Gene3D - 344 418 IPR036638 GO:0046983
Csa05g01353 533 PANTHER TRANSCRIPTION FACTOR BHLH49 40 531 - -
Csa05g01353 533 MobiDBLite consensus disorder prediction 510 533 - -
Csa05g01353 533 MobiDBLite consensus disorder prediction 245 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00391 Csa-Chr1:2423148 Csa05g01353 Csa-Chr5:14293739 5.79E-37 dispersed
Csa01g02037 Csa-Chr1:17325781 Csa05g01353 Csa-Chr5:14293739 3.86E-12 dispersed
Csa02g01869 Csa-Chr2:17778099 Csa05g01353 Csa-Chr5:14293739 6.06E-42 dispersed
Csa05g01353 Csa-Chr5:14293739 Csa05g02541 Csa-Chr5:26846039 4.42E-145 dispersed
Csa05g01353 Csa-Chr5:14293739 Csa04g02505 Csa-Chr4:24884098 7.23E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31738 PF00010 HLH 6.60E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01353 - - csv:101216110 1072.0