Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01367 ATGGAAATTATAGGAAAAACTGGGTTACTGTTTGGTCTGGCTTTTCTTTGGTTATGGGCTTTTTCATGTGAGGCTTCAACAAGCAAAGATCTTACTGCTGAAGTTCAAGTTTTGATGGGGATCAAAGCTGGTTTGAAGGATCCTCATTCTGTACTGAGTTGGGATGAAAATGCTGTGGATGCATTCTCACAACCAGAAGAAGACAGTCATGATAACTTGCTTCTTCAGAATAACAATATTTCAGGAAATATCCCCAAAGAGATTACCAAAATAACAAAACTTCACACCCTCGATCTTTCAAACAACTCGTTCTCTGGTGAAATTCCCAGCACTTTCTCCAATATGAAAAGCCTTCAATACCTAAGTTTTGGTATTGATATCAGGCGACTCAACAATAACACTTTATCAGGGCCAATCCCAACGTCACTGGCTAACATGACCCAGCTTACCCTGCTGGACTTATCCTATAATAACTTGAGCAGTCCTGTGCCCAGATTGCTGGCTAAGACATTTAACTTTACTGGAAACTATTTGATTTGTTCCCCTGGAACTAAGGAAGTATGCTATGGAACAACTCCGTTGCCACTTTCTTTTGCTGTTCCTAATTCCACGTATTTTCAACCTCCTAGGAGACACAGTGGCCAGAGAATTGCTTTAGTTATTGGTCTCAGCTTGAGCTGCATCTGTCTGTTCACTCTTGCATATGGTTTCTTTAGCTGGCGGAAGCATAGGCACAATCAACAAATATTCTTTGAAGCTAATGATTGGCATCGGGATGATCATAGCCTAGGGAACATAAAGAGGTTTCAGTTCAGAGAACTTCAGAATGCTACTCACAATTTCAGCAGTAAAAACTTGGTTGGGAAAGGTGGTTTTGGAAATGTATACAAAGGATATCTACAAGATGGCACCATCGTAGCTGTAAAGAGACTCAAAGATGGAAATGCTATGAGAGGAGAGATCCAGTTTCAGACTGAAGTTGAAATGATAAGCTTGGCAGTGCATAGGAACCTTCTCAGGTTATATGGTTTCTGTATGACAGAAACCGAAAGGCTTTTGGTCTATCCCTACATGTCCAATGGCAGTGTTGCAACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCCAGGGGATTGTTATACCTACATGAACAGTGTGATCCAAAAATAATTCATAGGGATGTGAAAGCTGCAAATATACTTCTTGATGATTTCTGTGAGGCAGTGGTGGGTGATTTTGGGCTGGCAAAGCTGTTAGATCACAGAGATTCACATGTCACTACTGCAGTTAGGGGAACCGTTGGGCACATTGCACCAGAGTATCTATCAACAGGCCAATCCTCAGAGAAAACAGATGTTTTCGGGTTCGGAATTCTACTTCTTGAGCTCATATCAGGTCAAAGAGCTCTCGAGTTTGGTAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAGAAGTAATTACGACCGAATCGAACTTGAAGAAATTGTTCGAGTTGCTCTCTTGTGCATTCAATATCTCCCAAGCCATAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGACTTGCTGAGAAATGGGAAGCTTCCCAAAGAGCAGAAGCAAGCAGGAGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACCGATGACTCTTCATTGTTTGTCCAAGCGATACAGCTCTCAGGACCAAGATAA 1806 42.19 MEIIGKTGLLFGLAFLWLWAFSCEASTSKDLTAEVQVLMGIKAGLKDPHSVLSWDENAVDAFSQPEEDSHDNLLLQNNNISGNIPKEITKITKLHTLDLSNNSFSGEIPSTFSNMKSLQYLSFGIDIRRLNNNTLSGPIPTSLANMTQLTLLDLSYNNLSSPVPRLLAKTFNFTGNYLICSPGTKEVCYGTTPLPLSFAVPNSTYFQPPRRHSGQRIALVIGLSLSCICLFTLAYGFFSWRKHRHNQQIFFEANDWHRDDHSLGNIKRFQFRELQNATHNFSSKNLVGKGGFGNVYKGYLQDGTIVAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLRSNYDRIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRSRANEFSSSERYSDLTDDSSLFVQAIQLSGPR* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14374418 14377747 - CsaV3_5G018890.1 Csa05g01367 529754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01367 601 MobiDBLite consensus disorder prediction 564 583 - -
Csa05g01367 601 Gene3D Phosphorylase Kinase; domain 1 250 357 - -
Csa05g01367 601 SMART serkin_6 281 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01367 601 ProSiteProfiles Protein kinase domain profile. 281 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01367 601 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 63 - -
Csa05g01367 601 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Csa05g01367 601 Pfam Protein kinase domain 282 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01367 601 SUPERFAMILY Protein kinase-like (PK-like) 264 556 IPR011009 -
Csa05g01367 601 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 71 601 - -
Csa05g01367 601 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Csa05g01367 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Csa05g01367 601 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 11 63 - -
Csa05g01367 601 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 71 601 - -
Csa05g01367 601 Gene3D Transferase(Phosphotransferase) domain 1 358 570 - -
Csa05g01367 601 Gene3D Ribonuclease Inhibitor 126 181 IPR032675 -
Csa05g01367 601 Gene3D Ribonuclease Inhibitor 33 125 IPR032675 -
Csa05g01367 601 MobiDBLite consensus disorder prediction 568 583 - -
Csa05g01367 601 SUPERFAMILY L domain-like 72 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01367 Csa-Chr5:14374418 Csa05g03065 Csa-Chr5:30756982 0 dispersed
Csa05g01367 Csa-Chr5:14374418 Csa05g02551 Csa-Chr5:26917973 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78243 PF00069 Pkinase 1.80E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01367 - - csv:101222667 1121.69