Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01391 ATGGTTCAAACCCACAACACCAAGAGTTTGGAACATTATGGGGGCGTTAGGGGATTGGCAAGAGAATTAAACGTTTCTTTGAAAGATGGAATTGTTACAAGTGAAATACCTTCAAGGCAGAACATATACGGCATCAACCGTTATGTTGAGAAGCCTTCAAGAGGCTTTTGGATGTTTGTATGGGAAGCCCTGCATGATTTGACTCTTGTCATTCTCTTGGTTTCTGCTGTGGTTTCCATTGGCGTTGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGATGGACTTGGAATAATAATGAGTATTTTTCTGGTCGTGATAGTAACGGCAGTCAGTGACTATAATCAGTCTTTGCAATTTAAGGACTTGGAAAAGCAGAAGAAAAACATTATCATTCAAGTCACTCGAGATGGATGCAGACAGAAGGTTTCCATTTACGACTTGGTGGTTGGAGATATTGTTCATTTGTCTATTGGAGATCAAGTCCCTGCTGATGGCATTTTGGTGTCAGGCTACAGCTTATCAATTGACGAATCGAGCTTATCAGGTGAAAGTGAACCTGTAAATGTAGATGATAATAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGATCTGGTAAAATGCTAGTTACCTCCGTTGGCATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGAGGAGATGACGAAACACCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATCATTGGAAAGATCGGCTTGGTATTCGCGGTGTTAACATTCATAGTTCTGATCTCAAGGTATATTGTGTTCAAAGCATTACACAATCAAATTGAGCATTGGTCCTCCAAAGATGCGTCAACGCTTCTAAATTACTTTGCCATTGCAGTAATTATAATTGTTGTTGCAGTTCCAGAAGGATTACCTCTGGCCGTAACACTAAGTCTTGCCTTTGCCATGAAAAGGTTAATGAAGGATAAGGCACTTGTGAGGCATCTCTCTGCTTGTGAGACTATGGGTTCTGCAACCTGCATTTGCACTGATAAAACAGGTACATTGACAACAAACCATATGGTCGTGGACAAGATGTGGATCTGTGAAGAAACGAGGACAACAAAAAATTCGGACGATGAAACTGCTTTGAAAAGCTCTGTAAATGAAACGGTATACAATCTCCTTATACAATCTATATTTCAAAATACCAGCTCAGAGGTGGTCAAAGGCAAAGACGGCAGAAACACCATATTGGGCACTCCAACTGAGACTGCATTGCTAGAATTTGGCTTGCTTATGGGTGGTGCTTTTGGTACATTGAATGATGAGTATAAGATCATCAAAGTGGAGCCATTCAATTCAAATAGAAAGAAAATGTCTGTTCTTGTGGCTCTTCCAACTGGTGGCTTTCGCGCATTTTGCAAGGGAGCATCCGAAATCATTTTATCCATGTGCGACAAGGTTCTCAGTGCTAATGGAGAAGCATTGCCTCTTTCAGATGAAAAAAGAATAAACATCTCGAATATCATTTATAGCTTTGCCAACGGTGCTCTTAGAACTTTATGCATCGCTTACAAGGATATAGAAGTTTCTTCAGCACCTGACAAAATTCCAGATAGTAATTTTACTTTAATAGCGGTTGTTGGGATTAAAGATCCTGTACGTCCAGGTGTAAAGGAGGCAGTTCAGGCTTGTTTGGCTGCTGGAATAACTGTAAGGATGGTGACTGGGGATAACATCAATACGGCTAGAGCCATAGCCAAAGAGTGTGGCATTTTGACAGAAGATGGTTTAGCAATAGAAGGGCCAGAGTTTCGCAATAAAAGCCAAGATGAAATGGAGATGTTAATACCAAAACTCCAGGTGATGGCTCGATCATCTCCTCTTGACAAGCACATGTTGGTTGGTCAGTTAAGGAAAACGTTCAAAGAAGTGGTGGCTGTCACAGGTGATGGTACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGATTGGCCATGGGTATTGCGGGAACAGAGGTTGCAAAAGAAAATGCGGACGTAGTCATAATGGATGATAATTTCACAACCATTGTTAATGTTGCGAGATGGGGACGTGCAGTCTACATCAACATTCAAAAGTTCGTTCAGTTTCAGCTTACAGTCAACGTAGTCGCTCTCATGCTCAATTTTATATCTGCATGCGCTTCAGGATCTGCTCCACTAACGGCTGTTCAAATGCTATGGGTGAACTTGATAATGGACACTCTTGGAGCTCTAGCTTTGGCCACAGAGCCTCCCAATGAGGGGCTGATGCAAAGAAAACCGATTGGGAGAAACGTTAATATCATCACTGGGATTATGTGGAGGAACATCATTGGTCAGAGCATCTATCAAATCACAGTGTTATTAATCCTCAGATTTGAAGGAAAACGCCTGCTGAATCTCACTGGTTCTGATTCAAGCATCATTCTCGACACCTTCATTTTCAACTCCTTCGTGTTTTGCCAGGTGTTCAATGAAATAAACAGCCGTGACATGGAAAAGATAAACGTGTTGAAAGGGATATTTGGGAGCTGGGTGTTCATTGGAGTGATGGCATCAACAGTAGGATTCCAAATCATAATAGTGGAATTTCTTGGGACGTTTGCAGAAACAGTGGGATTAAGCTTGAATTTATGGATAGCCAGCATTGTAATTGGAGCTTTGAGTTTGCCAATCGCAATGGTCTTGAAATGCATTCCTGTTTCAAACACCAAAACAACTTCCCACTTCCATGATGGTTATGAGCCTCTCCCTACTGGTCCTGACTTCGTTTAA 2799 41.91 MVQTHNTKSLEHYGGVRGLARELNVSLKDGIVTSEIPSRQNIYGINRYVEKPSRGFWMFVWEALHDLTLVILLVSAVVSIGVGNATEGWPKGMYDGLGIIMSIFLVVIVTAVSDYNQSLQFKDLEKQKKNIIIQVTRDGCRQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYSLSIDESSLSGESEPVNVDDNRPFLLAGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFIVLISRYIVFKALHNQIEHWSSKDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVDKMWICEETRTTKNSDDETALKSSVNETVYNLLIQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLLMGGAFGTLNDEYKIIKVEPFNSNRKKMSVLVALPTGGFRAFCKGASEIILSMCDKVLSANGEALPLSDEKRINISNIIYSFANGALRTLCIAYKDIEVSSAPDKIPDSNFTLIAVVGIKDPVRPGVKEAVQACLAAGITVRMVTGDNINTARAIAKECGILTEDGLAIEGPEFRNKSQDEMEMLIPKLQVMARSSPLDKHMLVGQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACASGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMQRKPIGRNVNIITGIMWRNIIGQSIYQITVLLILRFEGKRLLNLTGSDSSIILDTFIFNSFVFCQVFNEINSRDMEKINVLKGIFGSWVFIGVMASTVGFQIIIVEFLGTFAETVGLSLNLWIASIVIGALSLPIAMVLKCIPVSNTKTTSHFHDGYEPLPTGPDFV* 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14841551 14848463 + CsaV3_5G020120.1 Csa05g01391 529778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01391 932 Pfam Cation transporting ATPase, C-terminus 733 906 IPR006068 -
Csa05g01391 932 ProSitePatterns E1-E2 ATPases phosphorylation site. 349 355 IPR018303 -
Csa05g01391 932 SUPERFAMILY Calcium ATPase, transduction domain A 132 226 IPR008250 -
Csa05g01391 932 SMART Cation_ATPase_N_a_2 10 84 IPR004014 -
Csa05g01391 932 Gene3D - 30 230 - -
Csa05g01391 932 SFLD Haloacid Dehalogenase 329 700 - -
Csa05g01391 932 SFLD p-type atpase 329 700 IPR044492 -
Csa05g01391 932 PANTHER CATION TRANSPORTING ATPASE 1 916 - -
Csa05g01391 932 CDD P-type_ATPase_Ca_PMCA-like 39 781 - -
Csa05g01391 932 Pfam Cation transporter/ATPase, N-terminus 11 79 IPR004014 -
Csa05g01391 932 PRINTS H+-transporting ATPase (proton pump) signature 505 523 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa05g01391 932 PRINTS H+-transporting ATPase (proton pump) signature 648 664 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa05g01391 932 PRINTS H+-transporting ATPase (proton pump) signature 680 705 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa05g01391 932 SUPERFAMILY HAD-like 346 753 IPR036412 -
Csa05g01391 932 Pfam E1-E2 ATPase 133 326 - -
Csa05g01391 932 PRINTS P-type cation-transporting ATPase superfamily signature 178 192 - -
Csa05g01391 932 PRINTS P-type cation-transporting ATPase superfamily signature 347 361 - -
Csa05g01391 932 PRINTS P-type cation-transporting ATPase superfamily signature 545 556 - -
Csa05g01391 932 PRINTS P-type cation-transporting ATPase superfamily signature 567 577 - -
Csa05g01391 932 PRINTS P-type cation-transporting ATPase superfamily signature 648 667 - -
Csa05g01391 932 PRINTS P-type cation-transporting ATPase superfamily signature 672 684 - -
Csa05g01391 932 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 5 909 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Csa05g01391 932 Pfam Cation transport ATPase (P-type) 404 487 - -
Csa05g01391 932 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 910 IPR023298 -
Csa05g01391 932 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 618 733 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa05g01391 932 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 99 411 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa05g01391 932 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 354 549 IPR023299 GO:0000166
Csa05g01391 932 Gene3D - 357 552 IPR023299 GO:0000166
Csa05g01391 932 PANTHER CALCIUM-TRANSPORTING ATPASE 1 916 - -
Csa05g01391 932 Gene3D - 62 907 - -
Csa05g01391 932 Gene3D - 344 693 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00321 Csa-Chr2:2193143 Csa05g01391 Csa-Chr5:14841551 0 dispersed
Csa03g03769 Csa-Chr3:33403928 Csa05g01391 Csa-Chr5:14841551 0 dispersed
Csa05g01391 Csa-Chr5:14841551 Csa06g03028 Csa-Chr6:26063517 0 dispersed
Csa05g01391 Csa-Chr5:14841551 Csa04g02477 Csa-Chr4:24733875 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01391 K01537 - csv:101203529 1803.88