Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g01396 | ATGGCGAGCCGATACTGGATGGTCTCTTTACCTGTTCAAGGCTCCGCTTCCTCTCTATGGAATCGTCTTCAAGAACAAATCTCTAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTGGATTCGCTTCTTTCCCTCAGCGACGATCTTCTAAAGTCGAACACCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTAGATAGCATTCACAGCCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTATAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAGCATCTAGCAACCCTTCTCGTGATTATTCCCAAGTACTCTCAGAAAGAGTGGCTCTCTAGCTATGAGACACTGACTAGCTATGTAGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAATCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGCTTTAGAAGTTCTTTATTGCAGTGGTCCTATGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTTTGTGCCGTACGTGTCTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCGTTCCTGGCATCTGTTTTGGCGCCTTCTGTTAAAAGTGAAAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCTAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGCTGGTCTTGGAGGAGATTCTGATGCACACCCATATGTCTCATTCACAATCAATCTTGCTTAA | 1131 | 43.5 | MASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNTFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIIPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFNRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESFRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMAGLGGDSDAHPYVSFTINLA* | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 14894425 | 14900768 | + | CsaV3_5G020170.1 | Csa05g01396 | 529783 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g01396 | 376 | Gene3D | - | 41 | 312 | - | - | |
| Csa05g01396 | 376 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 2 | 375 | IPR036132 | GO:0015078|GO:0033180|GO:1902600 | |
| Csa05g01396 | 376 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 1 | 376 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 | |
| Csa05g01396 | 376 | Gene3D | - | 163 | 251 | - | - | |
| Csa05g01396 | 376 | CDD | V-ATPase_C | 5 | 373 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 | |
| Csa05g01396 | 376 | Pfam | V-ATPase subunit C | 5 | 369 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 | |
| Csa05g01396 | 376 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 1 | 376 | - | - | |
| Csa05g01396 | 376 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 5 | 334 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g01396 | K02148 | ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C | - | csv:101221574 | 725.317 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Csa02g01881 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1619.0 | |
| Csa06g01652 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.2 | |
| Csa02g02102 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 1.0e-295 | 1012.7 | |
| Csa07g00020 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.4 | 1.4e-295 | 1012.3 | |
| Csa07g00020 | . | 6 | 819 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1229.9 | |
| Csa02g02102 | . | 1 | 809 | Primary Pumps ATPases(2) | AT2G21410 | 73.9 | 0.0e+00 | 1204.9 | |
| Csa06g01652 | . | 9 | 820 | Primary Pumps ATPases(2) | AT2G21410 | 62.1 | 6.6e-298 | 1020.0 | |
| Csa07g00020 | . | 8 | 819 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.3 | |
| Csa02g02102 | . | 1 | 809 | Primary Pumps ATPases(2) | AT4G39080 | 74.7 | 0.0e+00 | 1199.9 | |
| Csa06g01652 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 5.6e-297 | 1016.9 | |
| Csa03g01099 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 4.5e-61 | 230.7 | |
| Csa02g02112 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.0e-60 | 229.6 | |
| Csa02g02113 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.0e-60 | 229.6 | |
| Csa03g01099 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 81.4 | 2.7e-67 | 251.9 | |
| Csa02g02112 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 5.9e-67 | 250.8 | |
| Csa02g02113 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 5.9e-67 | 250.8 | |
| Csa03g01099 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 5.4e-74 | 273.9 | |
| Csa02g02112 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 9.2e-74 | 273.1 | |
| Csa02g02113 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.2e-73 | 272.7 | |
| Csa02g02112 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 3.3e-52 | 201.1 | |
| Csa02g02113 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Csa03g01099 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Csa03g04355 | . | 1 | 175 | Primary Pumps ATPases(2) | AT2G25610 | 84.0 | 2.6e-71 | 265.4 | |
| Csa02g02355 | . | 6 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.1 | 3.8e-70 | 261.5 | |
| Csa03g01099 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 1.3e-60 | 229.2 | |
| Csa02g02112 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Csa02g02113 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Csa03g04355 | . | 6 | 175 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 2.0e-73 | 272.3 | |
| Csa02g02355 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.8 | 1.4e-71 | 266.2 | |
| Csa01g02374 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 80.3 | 0.0e+00 | 1665.6 | |
| Csa01g02374 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.2 | 0.0e+00 | 1667.5 | |
| Csa02g01881 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1619.0 | |
| Csa01g02374 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.4 | 0.0e+00 | 1312.0 | |
| Csa01g03136 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.2e-57 | 219.2 | |
| Csa07g00121 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 1.4e-268 | 921.8 | |
| Csa05g01396 | . | 1 | 377 | Primary Pumps ATPases(2) | AT1G12840 | 83.0 | 1.8e-181 | 632.1 | |
| Csa06g02409 | . | 617 | 878 | Primary Pumps ATPases(2) | AT3G58730 | 82.1 | 1.6e-117 | 419.1 | |
| Csa03g03694 | . | 3 | 455 | Primary Pumps ATPases(2) | AT3G42050 | 79.7 | 3.4e-208 | 721.1 | |
| Csa03g01099 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 5.4e-74 | 273.9 | |
| Csa02g02112 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 9.2e-74 | 273.1 | |
| Csa02g02113 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.2e-73 | 272.7 | |
| Csa07g00121 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 2.3e-269 | 924.5 | |
| Csa03g02469 | . | 1 | 184 | Primary Pumps ATPases(2) | AT1G64200 | 73.3 | 1.8e-65 | 245.7 | |
| Csa07g00121 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 3.0e-266 | 914.1 | |
| Csa06g01652 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.2 | |
| Csa02g02102 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 1.0e-295 | 1012.7 | |
| Csa07g00020 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.4 | 1.4e-295 | 1012.3 | |
| Csa03g03857 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 4.5e-192 | 667.2 | |
| Csa03g02469 | . | 1 | 230 | Primary Pumps ATPases(2) | AT4G11150 | 76.6 | 5.7e-90 | 327.4 | |
| Csa07g02282 | . | 1 | 624 | Primary Pumps ATPases(2) | AT1G78900 | 92.6 | 0.0e+00 | 1166.4 | |
| Csa07g00121 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 1.4e-268 | 921.8 | |
| Csa07g00121 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 2.3e-269 | 924.5 | |
| Csa07g00121 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 3.0e-266 | 914.1 | |
| Csa05g01396 | . | 1 | 377 | Primary Pumps ATPases(2) | AT1G12840 | 83.0 | 1.8e-181 | 632.1 | |
| Csa06g02409 | . | 617 | 878 | Primary Pumps ATPases(2) | AT3G58730 | 82.1 | 1.6e-117 | 419.1 | |
| Csa03g02469 | . | 1 | 230 | Primary Pumps ATPases(2) | AT4G11150 | 76.6 | 5.7e-90 | 327.4 | |
| Csa03g02469 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 1.1e-75 | 280.0 | |
| Csa03g02469 | . | 1 | 184 | Primary Pumps ATPases(2) | AT1G64200 | 73.3 | 1.8e-65 | 245.7 | |
| Csa01g03136 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.2e-57 | 219.2 | |
| Csa03g03694 | . | 3 | 455 | Primary Pumps ATPases(2) | AT3G42050 | 79.7 | 3.4e-208 | 721.1 | |
| Csa06g01652 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.2 | |
| Csa02g02102 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 1.0e-295 | 1012.7 | |
| Csa07g00020 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.4 | 1.4e-295 | 1012.3 | |
| Csa07g00020 | . | 6 | 819 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1229.9 | |
| Csa02g02102 | . | 1 | 809 | Primary Pumps ATPases(2) | AT2G21410 | 73.9 | 0.0e+00 | 1204.9 | |
| Csa06g01652 | . | 9 | 820 | Primary Pumps ATPases(2) | AT2G21410 | 62.1 | 6.6e-298 | 1020.0 | |
| Csa07g00020 | . | 8 | 819 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.3 | |
| Csa02g02102 | . | 1 | 809 | Primary Pumps ATPases(2) | AT4G39080 | 74.7 | 0.0e+00 | 1199.9 | |
| Csa06g01652 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 5.6e-297 | 1016.9 | |
| Csa03g01099 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 4.5e-61 | 230.7 | |
| Csa02g02112 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.0e-60 | 229.6 | |
| Csa02g02113 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.0e-60 | 229.6 | |
| Csa02g02112 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 3.3e-52 | 201.1 | |
| Csa02g02113 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Csa03g01099 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Csa03g01099 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 1.3e-60 | 229.2 | |
| Csa02g02112 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Csa02g02113 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Csa03g01099 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 81.4 | 2.7e-67 | 251.9 | |
| Csa02g02112 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 5.9e-67 | 250.8 | |
| Csa02g02113 | . | 2 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.9 | 5.9e-67 | 250.8 | |
| Csa03g01099 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 5.4e-74 | 273.9 | |
| Csa02g02112 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 9.2e-74 | 273.1 | |
| Csa02g02113 | . | 3 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 1.2e-73 | 272.7 | |
| Csa03g04355 | . | 6 | 175 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 2.0e-73 | 272.3 | |
| Csa02g02355 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.8 | 1.4e-71 | 266.2 | |
| Csa03g04355 | . | 1 | 175 | Primary Pumps ATPases(2) | AT2G25610 | 84.0 | 2.6e-71 | 265.4 | |
| Csa02g02355 | . | 6 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.1 | 3.8e-70 | 261.5 | |
| Csa03g03857 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 3.9e-199 | 690.6 | |
| Csa03g03857 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 4.5e-192 | 667.2 | |
| Csa01g02374 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 80.3 | 0.0e+00 | 1665.6 | |
| Csa01g02374 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.4 | 0.0e+00 | 1312.0 | |
| Csa02g01881 | . | 1 | 998 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1619.0 | |
| Csa01g02374 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.2 | 0.0e+00 | 1667.5 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007861 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 36 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Csa05g01396 | Csa_Chr05 | FPKM | 0.869204 | 0.758388 | 0.0 | 0.301869 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |