Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01397 ATGAAAATGTTGCATGTGAATGGAGGAGAGGGAGACATGAGTTATGCCAACAACTCCTTACTTCAGAGAAACGTGTTGTCTTCAACATGGCTAATAGCAAAGGAAGCCATTTCCAAATTTTGTCATCAAAGTAATTTTCCAATCACCACTTTCACCATGGCGGAGTTGGGCTGTTCTTGTGGCCCAAACGCTCTGTTGATTGCTTCCAAGTTAGTGGAGCAAGTGGAGGAGATTCGTAAAAGGCTTCAGAAAAAGACTTTGGAGTATCAAATTTTGCTGAATGATCTACACGGAAATGACTTCAATACTATATTTAGATTCTTACCAAGTTTCTTGCAAGAGTTGAAAACCAAAATTGGAGGTCATGATTCTGATTTTGGTCCATGTTTTTTTAATGGGGTGCCTGGTTCTTTCTATTTGAGGCTTTTTCCAACCAATTCTGTCCATTTCTTTCATTCCACTTACACCCTCCATTGGCTCTCTCAGGTCCCTGAAGGTATAGGTAACAAAAACAAAGGGAAGATATTCATGAGCAGTACAAGTCCAAAGAGTGTGGTTGAAGCTTATTACAAACAATTCCAAATGGATTTTTCAATGTTCTTAAAGTGTCGTGCTGAAGAACTAGTAATTGGTGGACATATGATTCTCACAATGTTAGGAAGAACAAGTGAAGAACCATGGAGCAAAGAATGTACTTCTTTTTGGGAGTTTTTATCTTTAGCTCTAAATACCATGGTGGCCGAGACAAATGAGCAGAACACCCAAACAACAATTCGGACTTGTGGAGGAGGAAAAAGTGAACTTGTTCAATATACCAAATTATATGCCGTCTCCGAAGAAGTAGAAGTGGAAGTGTTAGAGGAAGGAAGGTTTGGTATTAGTCATCTTCAAGTTTCAAGAGTTGATTGGGGCCTTTGTGATGATGCAGAAACAAATCTACTCCTTCTTGTCACCATTACCGCTTCAACTTTGTCCTCTACCGTCGTTAAACACCTAACCACTCCTAGACTCGTCGCTTATGCCGCTGTTGCCCGTTTCTTTGTTTCAGCTGCGCCCTCAGTGACTCGAGACTTCAACATCCAGATCACCCTCTTCATCGCCCTTAGCCATACACTCTATGTAAAGTCACCATGTGCCACCGATATTCCACATCTCTTATTTCCCACATTTGGGTGTTTCGCCGTCTTATGGATCTTTATGAAGATCCCTATTTTAGCTCATAAGTTTGTAGGTGACCCTTATATGTCATTTCGTTATTACGATAGCAATGATTATTTTAATAAAAGTGATGTCGAATATGAAATCGATCCATTAGTAAAATTGGGATGTGGTCCTGTAATGCATCATTTTGTGATGCATGTTTGCAAAGAGCTTGTATGA 1380 39.93 MKMLHVNGGEGDMSYANNSLLQRNVLSSTWLIAKEAISKFCHQSNFPITTFTMAELGCSCGPNALLIASKLVEQVEEIRKRLQKKTLEYQILLNDLHGNDFNTIFRFLPSFLQELKTKIGGHDSDFGPCFFNGVPGSFYLRLFPTNSVHFFHSTYTLHWLSQVPEGIGNKNKGKIFMSSTSPKSVVEAYYKQFQMDFSMFLKCRAEELVIGGHMILTMLGRTSEEPWSKECTSFWEFLSLALNTMVAETNEQNTQTTIRTCGGGKSELVQYTKLYAVSEEVEVEVLEEGRFGISHLQVSRVDWGLCDDAETNLLLLVTITASTLSSTVVKHLTTPRLVAYAAVARFFVSAAPSVTRDFNIQITLFIALSHTLYVKSPCATDIPHLLFPTFGCFAVLWIFMKIPILAHKFVGDPYMSFRYYDSNDYFNKSDVEYEIDPLVKLGCGPVMHHFVMHVCKELV* 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14937232 14943388 + CsaV3_5G020180.1 Csa05g01397 529784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01397 459 Gene3D Vaccinia Virus protein VP39 18 302 IPR029063 -
Csa05g01397 459 Coils Coil 68 95 - -
Csa05g01397 459 Gene3D - 3 310 IPR042086 -
Csa05g01397 459 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 3 320 IPR005299 GO:0008168
Csa05g01397 459 PANTHER OS05G0102000 PROTEIN 3 320 - -
Csa05g01397 459 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 335 IPR029063 -
Csa05g01397 459 Pfam SAM dependent carboxyl methyltransferase 35 308 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01397 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101202849 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01397 Csa-Chr5:14937232 Csa06g03266 Csa-Chr6:27482065 8.75E-108 dispersed
Csa05g01397 Csa-Chr5:14937232 Csa06g03261 Csa-Chr6:27448277 1.75E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g02124 . . . . . . . . . . . . . . . . . . Csa05g01397 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01397 Csa_Chr05 FPKM 9.108346 9.144835 16.858978 13.245586 10.644606 10.842568 10.246194 21.016039 21.827938 23.222898