Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01402 ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACGAACAAAGAAGTTGATGGCCATATACCGAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCACGCAGATGTGGAGACGGATGAAGTATATGCGCAGATGACATTACAACCATTGACTGCACAAGAACAAAAGGATACGTTTCTACCCATGGAATTGGGGATTCCAAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACAGCAAGTGATACAAGCACTCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTCTCACAACAGCCACCGGCACAAGAGCTGATTGCGAAAGACCTTCATGACATCGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTCGTTAGTGCCAAAAGATTGGTAGCTGGGGATTCGGTTCTCTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCTTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACAAATAGCTGTTTCACAGTGTTTTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTTTGACAAAATATGTTAAAGCTGTATTTCATACCCGCGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGCTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTTGGGTGGGATGAGTCAACAGCTGGAGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATCGAGCCTTTGACTACATTTCCTATGTATCCGTCTCTGTTTCCACTTAGACTGAAACGTCCATGGCATCCTGGAGTGTCTTCTGTTCATGATAACAGAGAGGATGCATCAAATGGCTTAATGTGGCTCCGGGGAGGAGTTGGGGAACAGGGTCTACACTCACTGAATTTGCAATCTGTGAGCTCTCTGCCCTGGTTGCAGCAGAGACTTGATTCTTCTATGTTTGGAAATGATCATAATCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCCAACCTTGGAGGTGTTGATATGCTGAGGCAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCCACAGGCAGGCTTCCATAACTCTCTATTGCAAATGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAATTGGTTCAGCACTCTATGCCTCAAAACATTCTGCAGGCACCAAGCCAAGTTATGGCAGAAAATCTACCTCAGCACATTCTTCAGCAAACTCTACAAAATCAACCTGAGGATCTGCCAAACCAACAGCAGCATACTTATCATGATACCATTCAGGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCAAATGTGCCATCACCCACATTTCCCAGAACAGACCTTATGGATTCCAACACTAGTTACTCCGAATCCATTACCTCTAGAAGAAATATTCTTGCTTCATCATGTGCTGAGGGGACAGGAAATCTCTCCACCATCTACAGAAGTGGGCAGTCAATCCTAACTGAGCACTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAAGTTGACGCTCACCCAAACTCTATGTCATTTCCACCTTTTTCTGGTAGAGACTCAATTTTGGAGCTGAGAAATTGCAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCTTCTAATGTGCCCACTTACACTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCACTGGGAGATTCTGGATTTCAGAATTCTCTTTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAACTCAGGGCAAGTTGATCCATCAAATCCAACTCGGACATTTGTAAAGGTTTACAAAACCGGGTCTGTTGGGCGCTCACTAGACATCTCTCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAACTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGTGGAAGACCCTCGTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTCAATAATGTCGGGTTTATCAAGATACTTTCTCCCGAGGACTTTCAGAAACTAGGGGAACAGGCGATCGAGTCCTTTAACCCTATCGTTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGGAAATGTTTCGGGATTACCGTCTGTTGGTTCGCTAGAGTATTGA 2565 45.69 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIAKDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNREDASNGLMWLRGGVGEQGLHSLNLQSVSSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIPQAGFHNSLLQMQQQQQQQQQQQQQQLVQHSMPQNILQAPSQVMAENLPQHILQQTLQNQPEDLPNQQQHTYHDTIQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTSYSESITSRRNILASSCAEGTGNLSTIYRSGQSILTEHLPQQSPVSKNAHSQVDAHPNSMSFPPFSGRDSILELRNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYTSPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHNSGQVDPSNPTRTFVKVYKTGSVGRSLDISRFSSYQELREELAQMFGIEGQLVEDPRRSGWQLVFVDRENDVLLLGDDPWEAFVNNVGFIKILSPEDFQKLGEQAIESFNPIVGQRLTSGGNEAGNVSGLPSVGSLEY* 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15021321 15044532 - CsaV3_5G020230.1 Csa05g01402 529789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01402 854 PANTHER AUXIN RESPONSE FACTOR 8 1 829 - -
Csa05g01402 854 Gene3D - 724 818 - -
Csa05g01402 854 SMART B3_2 128 230 IPR003340 GO:0003677
Csa05g01402 854 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Csa05g01402 854 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Csa05g01402 854 Gene3D - 126 230 IPR015300 -
Csa05g01402 854 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 829 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa05g01402 854 ProSiteProfiles PB1 domain profile. 728 813 IPR000270 GO:0005515
Csa05g01402 854 CDD B3_DNA 127 228 IPR003340 GO:0003677
Csa05g01402 854 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Csa05g01402 854 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa05g01402 854 Pfam AUX/IAA family 725 813 IPR033389 -
Csa05g01402 854 SUPERFAMILY CAD & PB1 domains 721 803 - -
Csa05g01402 854 Gene3D - 292 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00687 Csa-Chr2:5531533 Csa05g01402 Csa-Chr5:15021321 4.25E-31 dispersed
Csa03g04263 Csa-Chr3:37338045 Csa05g01402 Csa-Chr5:15021321 2.36E-30 dispersed
Csa05g01402 Csa-Chr5:15021321 Csa07g01449 Csa-Chr7:14775256 2.04E-13 dispersed
Csa06g03820 Csa-Chr6:30293446 Csa05g01402 Csa-Chr5:15021321 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31742 PF02309 AUX_IAA 5.90E-08 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01402 - - csv:101208098 1701.03