Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01429 ATGTCAAAAGAGGAAGTTATAATTTTGGATTGTTCGCTCAGCCCATTTTGCAATAGGGTTAAGATTGCTTTGAATGAGAAGGGAGTGAGTTATGAGAGTAAGGAAGAGGATTTGTTTGGTTTCAAAGGTGGGAAAAGTGAGTTGTTGCTCAAATCTAACCCTATTTATAAGAAAGTGCCTGTTCTCTTGCATAATGGTAAGCCATTGAATGAAAGCTCCATTATTGTTAGCTATATTGATGAGACATGGCCTTCTTCTTCCCCACTTCTTCCTTCGTTGCCCTACGAAAGAGCTCAAGCTCGGTTCTGGATTGACTACATCGACAAAAAGGTATTTGATGTGGGTTCGAAGATTTGGAAGAGCAATGGAGAAGAGCAAGAAGAAGCCAAGAAACAGTTGATAGAGATTTTGAAGCAATTGGAGGAAGCTTTAGGGGACAAAGATTTCTTTGGAGGTGAAAAGTTTGGGATTGTGGATGTGATTTTAATTCCATTCACAAGTTGGTTCTATACTTATGAGAAAGTTGGGAACTTCAAAGTGGAAGAATGTTGCCCTAAATTCTCAGCTTGGGAAAAGAGGTGTTTGCAAAAGGACACTGTTGCAAGTGTTCTTCCTTGCCCTGAGAAGATTTATAACTTTATAACCTCCATGAGAAAGAACCTTGGACTTGAATAG 675 39.26 MSKEEVIILDCSLSPFCNRVKIALNEKGVSYESKEEDLFGFKGGKSELLLKSNPIYKKVPVLLHNGKPLNESSIIVSYIDETWPSSSPLLPSLPYERAQARFWIDYIDKKVFDVGSKIWKSNGEEQEEAKKQLIEILKQLEEALGDKDFFGGEKFGIVDVILIPFTSWFYTYEKVGNFKVEECCPKFSAWEKRCLQKDTVASVLPCPEKIYNFITSMRKNLGLE* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15390580 15391982 - CsaV3_5G020500.1 Csa05g01429 529816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01429 224 Coils Coil 123 146 - -
Csa05g01429 224 Pfam Glutathione S-transferase, N-terminal domain 12 81 IPR004045 -
Csa05g01429 224 SUPERFAMILY Thioredoxin-like 7 111 IPR036249 -
Csa05g01429 224 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 216 - -
Csa05g01429 224 Gene3D - 94 224 - -
Csa05g01429 224 SUPERFAMILY GST C-terminal domain-like 81 220 IPR036282 -
Csa05g01429 224 SFLD Main (cytGST) 2 221 - -
Csa05g01429 224 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Csa05g01429 224 ProSiteProfiles Glutaredoxin domain profile. 1 97 - -
Csa05g01429 224 Gene3D Glutaredoxin 2 92 - -
Csa05g01429 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 213 IPR010987 -
Csa05g01429 224 Pfam Glutathione S-transferase, C-terminal domain 122 197 IPR004046 -
Csa05g01429 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 216 IPR045073 -
Csa05g01429 224 CDD GST_N_Tau 6 83 - -
Csa05g01429 224 CDD GST_C_Tau 95 217 IPR045074 GO:0004364|GO:0006749
Csa05g01429 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 87 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00770 Csa-Chr4:5309846 Csa05g01429 Csa-Chr5:15390580 7.38E-81 dispersed
Csa04g00772 Csa-Chr4:5329810 Csa05g01429 Csa-Chr5:15390580 3.79E-78 dispersed
Csa05g01429 Csa-Chr5:15390580 Csa04g01557 Csa-Chr4:15098037 1.45E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01429 K00799 - csv:101213628 449.514