Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01429 ATGTCAAAAGAGGAAGTTATAATTTTGGATTGTTCGCTCAGCCCATTTTGCAATAGGGTTAAGATTGCTTTGAATGAGAAGGGAGTGAGTTATGAGAGTAAGGAAGAGGATTTGTTTGGTTTCAAAGGTGGGAAAAGTGAGTTGTTGCTCAAATCTAACCCTATTTATAAGAAAGTGCCTGTTCTCTTGCATAATGGTAAGCCATTGAATGAAAGCTCCATTATTGTTAGCTATATTGATGAGACATGGCCTTCTTCTTCCCCACTTCTTCCTTCGTTGCCCTACGAAAGAGCTCAAGCTCGGTTCTGGATTGACTACATCGACAAAAAGGTATTTGATGTGGGTTCGAAGATTTGGAAGAGCAATGGAGAAGAGCAAGAAGAAGCCAAGAAACAGTTGATAGAGATTTTGAAGCAATTGGAGGAAGCTTTAGGGGACAAAGATTTCTTTGGAGGTGAAAAGTTTGGGATTGTGGATGTGATTTTAATTCCATTCACAAGTTGGTTCTATACTTATGAGAAAGTTGGGAACTTCAAAGTGGAAGAATGTTGCCCTAAATTCTCAGCTTGGGAAAAGAGGTGTTTGCAAAAGGACACTGTTGCAAGTGTTCTTCCTTGCCCTGAGAAGATTTATAACTTTATAACCTCCATGAGAAAGAACCTTGGACTTGAATAG 675 39.26 MSKEEVIILDCSLSPFCNRVKIALNEKGVSYESKEEDLFGFKGGKSELLLKSNPIYKKVPVLLHNGKPLNESSIIVSYIDETWPSSSPLLPSLPYERAQARFWIDYIDKKVFDVGSKIWKSNGEEQEEAKKQLIEILKQLEEALGDKDFFGGEKFGIVDVILIPFTSWFYTYEKVGNFKVEECCPKFSAWEKRCLQKDTVASVLPCPEKIYNFITSMRKNLGLE* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15390580 15391982 - CsaV3_5G020500.1 Csa05g01429 529816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01429 224 Coils Coil 123 146 - -
Csa05g01429 224 Pfam Glutathione S-transferase, N-terminal domain 12 81 IPR004045 -
Csa05g01429 224 SUPERFAMILY Thioredoxin-like 7 111 IPR036249 -
Csa05g01429 224 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 216 - -
Csa05g01429 224 Gene3D - 94 224 - -
Csa05g01429 224 SUPERFAMILY GST C-terminal domain-like 81 220 IPR036282 -
Csa05g01429 224 SFLD Main (cytGST) 2 221 - -
Csa05g01429 224 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Csa05g01429 224 ProSiteProfiles Glutaredoxin domain profile. 1 97 - -
Csa05g01429 224 Gene3D Glutaredoxin 2 92 - -
Csa05g01429 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 213 IPR010987 -
Csa05g01429 224 Pfam Glutathione S-transferase, C-terminal domain 122 197 IPR004046 -
Csa05g01429 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 216 IPR045073 -
Csa05g01429 224 CDD GST_N_Tau 6 83 - -
Csa05g01429 224 CDD GST_C_Tau 95 217 IPR045074 GO:0004364|GO:0006749
Csa05g01429 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 87 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01429 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101213628 449.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00770 Csa-Chr4:5309846 Csa05g01429 Csa-Chr5:15390580 7.38E-81 dispersed
Csa04g00772 Csa-Chr4:5329810 Csa05g01429 Csa-Chr5:15390580 3.79E-78 dispersed
Csa05g01429 Csa-Chr5:15390580 Csa04g01557 Csa-Chr4:15098037 1.45E-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g01815 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.7e-64 242.7
Csa07g01817 . 1 210 Glutathione S-transferase Gene Family AT4G02520 58.7 6.5e-64 240.7
Csa07g01816 . 18 176 Glutathione S-transferase Gene Family AT4G02520 58.0 3.0e-45 178.7
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 4.5e-65 244.6
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT2G02930 59.5 4.5e-65 244.6
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT2G02930 59.5 2.5e-47 185.7
Csa07g01815 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.7 3.4e-59 225.3
Csa07g01817 . 6 215 Glutathione S-transferase Gene Family AT1G02950 53.1 4.9e-58 221.5
Csa07g01816 . 18 173 Glutathione S-transferase Gene Family AT1G02950 54.1 4.9e-42 168.3
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 2.4e-63 238.8
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.3 2.4e-63 238.8
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT1G02930 56.9 5.1e-45 177.9
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.7 7.6e-65 243.8
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT1G02920 55.2 3.8e-64 241.5
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT1G02920 58.8 2.4e-47 185.7
Csa07g01815 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.8 1.4e-68 256.5
Csa07g01817 . 4 215 Glutathione S-transferase Gene Family AT2G47730 57.7 1.9e-65 246.1
Csa07g01817 . 20 215 Glutathione S-transferase Gene Family AT1G49860 50.5 5.1e-47 184.9
Csa04g01557 . 1 209 Glutathione S-transferase Gene Family AT2G29450 50.5 3.3e-50 195.3
Csa03g00999 . 169 363 Glutathione S-transferase Gene Family AT2G29450 50.5 1.3e-49 193.4
Csa04g00769 . 3 145 Glutathione S-transferase Gene Family AT2G29420 53.1 1.7e-38 156.4
Csa04g01568 . 3 215 Glutathione S-transferase Gene Family AT3G09270 54.0 2.1e-65 245.7
Csa04g01557 . 1 221 Glutathione S-transferase Gene Family AT3G09270 54.8 1.8e-64 242.7
Csa04g01558 . 4 225 Glutathione S-transferase Gene Family AT3G09270 51.1 9.9e-63 236.9
Csa04g01561 . 3 215 Glutathione S-transferase Gene Family AT3G09270 52.6 3.8e-62 235.0
Csa04g01569 . 3 222 Glutathione S-transferase Gene Family AT3G09270 53.4 1.9e-61 232.6
Csa04g01555 . 2 216 Glutathione S-transferase Gene Family AT3G09270 51.4 2.7e-60 228.8
Csa04g01560 . 1 218 Glutathione S-transferase Gene Family AT3G09270 53.0 4.6e-60 228.0
Csa04g01567 . 3 218 Glutathione S-transferase Gene Family AT3G09270 50.7 1.0e-59 226.9
Csa03g00999 . 169 372 Glutathione S-transferase Gene Family AT3G09270 51.9 2.8e-57 218.8
Csa04g00772 . 4 218 Glutathione S-transferase Gene Family AT1G78380 71.2 7.4e-87 317.0
Csa04g00770 . 1 216 Glutathione S-transferase Gene Family AT1G78380 67.1 1.2e-84 309.7
Csa05g01429 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.9e-66 249.2
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G78380 66.0 1.7e-51 199.5
Csa04g00772 . 8 215 Glutathione S-transferase Gene Family AT1G78370 65.4 1.9e-79 292.4
Csa04g00770 . 1 214 Glutathione S-transferase Gene Family AT1G78370 61.2 4.4e-76 281.2
Csa05g01429 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 2.8e-62 235.3
Csa04g00769 . 7 147 Glutathione S-transferase Gene Family AT1G78370 61.0 5.7e-47 184.5
Csa04g00770 . 1 216 Glutathione S-transferase Gene Family AT1G78340 62.5 6.2e-78 287.3
Csa04g00772 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 6.2e-78 287.3
Csa05g01429 . 4 219 Glutathione S-transferase Gene Family AT1G78340 52.8 1.8e-61 232.6
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G78340 62.6 2.9e-51 198.7
Csa03g00999 . 169 314 Glutathione S-transferase Gene Family AT1G78340 51.7 3.9e-40 161.8
Csa04g00772 . 3 218 Glutathione S-transferase Gene Family AT1G78320 51.4 8.3e-58 220.3
Csa04g00772 . 1 217 Glutathione S-transferase Gene Family AT1G17180 69.1 2.2e-86 315.5
Csa04g00770 . 1 218 Glutathione S-transferase Gene Family AT1G17180 61.9 2.5e-82 302.0
Csa05g01429 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 8.6e-67 250.4
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G17180 62.6 6.6e-51 197.6
Csa04g00772 . 1 215 Glutathione S-transferase Gene Family AT1G17190 60.0 4.2e-74 274.6
Csa04g00770 . 3 217 Glutathione S-transferase Gene Family AT1G17190 54.9 1.7e-70 262.7
Csa04g00769 . 2 176 Glutathione S-transferase Gene Family AT1G17190 54.3 5.2e-48 188.0
Csa04g00770 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.6 9.4e-69 256.9
Csa04g00772 . 1 216 Glutathione S-transferase Gene Family AT3G43800 51.8 9.1e-64 240.4
Csa05g01429 . 1 219 Glutathione S-transferase Gene Family AT3G43800 50.9 1.2e-60 229.9
Csa04g00769 . 3 147 Glutathione S-transferase Gene Family AT3G43800 56.8 4.0e-43 171.8
Csa04g00772 . 3 216 Glutathione S-transferase Gene Family AT1G53680 55.1 2.1e-65 245.7
Csa04g00770 . 4 218 Glutathione S-transferase Gene Family AT1G53680 54.4 1.1e-64 243.4
Csa05g01429 . 1 225 Glutathione S-transferase Gene Family AT1G53680 54.6 1.4e-64 243.0
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G53680 56.3 4.5e-39 158.3
Csa02g01635 . 51 222 Glutathione S-transferase Gene Family AT2G02390 66.3 5.7e-59 224.2
Csa02g01638 . 50 218 Glutathione S-transferase Gene Family AT2G02390 63.3 5.3e-57 217.6
Csa03g00969 . 61 227 Glutathione S-transferase Gene Family AT2G02390 50.3 3.0e-44 175.3
Csa02g01635 . 8 220 Glutathione S-transferase Gene Family AT2G02380 63.8 5.6e-74 274.2
Csa02g01638 . 6 218 Glutathione S-transferase Gene Family AT2G02380 57.7 3.2e-69 258.5
Csa03g00969 . 20 226 Glutathione S-transferase Gene Family AT2G02380 51.7 6.9e-56 214.2
Csa04g00600 . 1 237 Glutathione S-transferase Gene Family AT5G41210 70.0 9.7e-96 346.7
Csa04g00600 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 4.1e-92 335.9
Csa03g03227 . 6 235 Glutathione S-transferase Gene Family AT5G02780 66.7 6.1e-87 317.4
Csa03g03229 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.0 1.3e-81 299.7
Csa05g00645 . 77 296 Glutathione S-transferase Gene Family AT5G02780 63.5 5.2e-78 287.7
Csa03g03230 . 14 228 Glutathione S-transferase Gene Family AT5G02780 63.6 3.4e-77 285.0
Csa05g00645 . 54 294 Glutathione S-transferase Gene Family AT3G55040 63.6 6.0e-84 307.8
Csa03g03227 . 6 236 Glutathione S-transferase Gene Family AT3G55040 58.4 1.2e-76 283.5
Csa03g03229 . 3 230 Glutathione S-transferase Gene Family AT3G55040 58.1 1.3e-75 280.0
Csa03g03230 . 4 228 Glutathione S-transferase Gene Family AT3G55040 55.8 2.8e-73 272.3
Csa03g03227 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.5 3.9e-94 341.3
Csa03g03229 . 7 232 Glutathione S-transferase Gene Family AT5G02790 68.7 3.8e-89 324.7
Csa03g03230 . 6 228 Glutathione S-transferase Gene Family AT5G02790 64.7 3.1e-83 305.1
Csa05g00645 . 69 296 Glutathione S-transferase Gene Family AT5G02790 61.1 1.9e-80 295.8
Csa05g00668 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.2 1.0e-80 296.6
Csa03g02084 . 119 326 Glutathione S-transferase Gene Family AT1G19570 60.3 5.9e-73 270.8
Csa05g00668 . 1 211 Glutathione S-transferase Gene Family AT1G75270 70.8 8.8e-85 310.1
Csa03g02084 . 119 326 Glutathione S-transferase Gene Family AT1G75270 62.2 4.1e-74 274.6
Csa03g02084 . 63 329 Glutathione S-transferase Gene Family AT5G16710 66.9 9.6e-102 366.7
Csa05g00668 . 3 210 Glutathione S-transferase Gene Family AT5G16710 60.6 1.7e-74 276.2
Csa04g01774 . 1 268 Glutathione S-transferase Gene Family AT1G77290 68.7 1.2e-107 386.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014456 0 1 0 0 0 1 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01429 Csa_Chr05 FPKM 2.964103 3.206657 1.965445 1.846767 11.15528 13.011499 10.764571 0.965878 1.456678 1.306609