Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01432 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACTGTCGCAGCACTTCTCACATCTCCAGTCTCCTCCCATTTCTCTTCTACAACCTCCTCCCCCTCCCCGGATTCCTCCCCTTCCCTCTCCGACTGGAGATCTGCTCGTGCCACCTACTACGCCGCCTCCGACCCTCGCGATGCGGTCGGCGGAGCCTGTGGTTATGGCGATTTAGTGAAGGCAGGCTATGGCATGGCCACTGTGGGGCTCAGCGAGTCGTTGTTTGAACGCGGACAGATCTGCGGTGCCTGCTTTCAGCTTCGCTGTGTGGAGGACCTCCGGTGGTGTATTCCTGGAACCTCTATCATTGTCACTGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTCCTCCCTATTGAGGCCTTTGAAAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGCCGAAAGGAAGGGGGTATTCGATATACAGTTTCTGGGTATGGCATTTATCTCTCAGTGTTGATAAGTAACGTTGCGGGCGCTGGAGATGTGAGTGCTGTAAAGATCAAGGGCACGAGAACTGGTTGGCTTCCGATGGGTCGTAACTGGGGGCAAAACTGGCACATTAATGCTGATTTGAACCATCAAGCCCTTTCGTTTGAAGTCACTAGCAGTGATGGAGTAACAATTACATCCTACAATGTTGCTCCAAAGGATTGGAACTTTGGGCAGACTTTTGAAGGCAAACAATTTGAATCTTGA 807 50.81 MSPSLPLHFLFTVAALLTSPVSSHFSSTTSSPSPDSSPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRYTVSGYGIYLSVLISNVAGAGDVSAVKIKGTRTGWLPMGRNWGQNWHINADLNHQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEGKQFES* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15429738 15439213 - CsaV3_5G020530.1 Csa05g01432 529819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01432 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Csa05g01432 268 Gene3D - 27 170 IPR036908 -
Csa05g01432 268 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Csa05g01432 268 SMART dpbb_1 78 164 IPR007112 -
Csa05g01432 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Csa05g01432 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Csa05g01432 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Csa05g01432 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Csa05g01432 268 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Csa05g01432 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Csa05g01432 268 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Csa05g01432 268 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
Csa05g01432 268 Pfam Lytic transglycolase 79 164 IPR009009 -
Csa05g01432 268 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Csa05g01432 268 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Csa05g01432 268 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Csa05g01432 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Csa05g01432 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Csa05g01432 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Csa05g01432 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Csa05g01432 268 PRINTS Expansin signature 220 241 IPR002963 GO:0009664
Csa05g01432 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Csa05g01432 268 PANTHER EXPANSIN-A15 24 267 IPR002963 GO:0009664
Csa05g01432 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Csa05g01432 268 PANTHER EXPANSIN-A13 24 267 - -
Csa05g01432 268 Gene3D - 175 266 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01432 Csa-Chr5:15429738 Csa01g02423 Csa-Chr1:21492231 2.10E-91 dispersed
Csa05g01432 Csa-Chr5:15429738 Csa06g01479 Csa-Chr6:12545225 9.87E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01432 - - csv:101206236 520.776