Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01444 ATGGTTCTCTCCAAAACCGCCTCTCAGTCCGATGTCTCCGTCCATTCCACCTTCGCTTCCAGATATGTCCGAACCTCTCTCCCAAGATTCAAAATGCCGGAAAATTCGATCCCCAAGGAAGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTGGCCTCCTTTGTTACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCTTCCATTAACAAGAATTACGTTGATATGGATGAATATCCTGTCACCACTGAGCTTCAGAACCGATGTGTGAATATGATAGCACATTTGTTCAATGCCCCATTGGGTGATTCTGAAACGGCAGTGGGAGTTGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAATGGCAGAACAGAAGGAAGGCTGAAGGCAAGCCCTATGACAAGCCCAACATTGTCACTGGTGCTAATGTCCAGGTATGCTGGGAGAAATTTGCAAGATACTTCGAAGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTACTATGTGATGGATCCAGAGAAAGCTGTAGAGATGGTTGATGAGAACACAATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTAAACGATCTCTTAGTCGAGAAGAACAAAGAAACTGGATGGGATACTCCTATTCATGTTGATGCTGCGAGTGGAGGGTTTATTGCTCCATTCATTTACCCTGAGCTAGAATGGGACTTTAGGTTGCCACTTGTAAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAAGAAGATTTGCCTGAAGAACTTATCTTTCATATCAACTATCTTGGAGCTGACCAACCCACTTTCACCCTCAATTTCTCCAAAGGATCTAGTCAAGTCATTGCTCAGTATTACCAATTGATCCGTTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAGAGAAAACATGATTGTCCTAAAGGAAGGACTCGAGAAAACAGGGCGGTTCAACATCGTGTCAAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACGGAGTTTGAGGTTTCAGAAATGCTGAGGAGGTTCGGCTGGATTGTACCAGCTTACACCATGCCTCCGGATGCACAACACATAACCGTCCTTAGAGTAGTGATCCGAGAAGATTTTTCTCGCACGCTTGCTGAGCGTCTTGTGAATGATATTGAGAAAACATTGCACGAACTCGATAGCCTCCCATCGAAGGCTGATATCAAGACAACAGTGGCTGGAGAAGAGACGCAGAAGAACGATGTCGTGGTGGCAAAGAAGAGCGCTCTTGAGACGCAGAGGGAGATCACAACTGCTTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACCAATGGAGTTTGTTAG 1500 45.0 MVLSKTASQSDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCRENMIVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVNDIEKTLHELDSLPSKADIKTTVAGEETQKNDVVVAKKSALETQREITTAWRKFVMEKKKTNGVC* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15677586 15685330 + CsaV3_5G020650.1 Csa05g01444 529831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01444 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Csa05g01444 499 Gene3D - 66 360 IPR015421 GO:0003824
Csa05g01444 499 Gene3D - 361 448 - -
Csa05g01444 499 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Csa05g01444 499 CDD DOPA_deC_like 59 439 - -
Csa05g01444 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Csa05g01444 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Csa05g01444 499 Gene3D - 1 65 - -
Csa05g01444 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00500 Csa-Chr1:3331676 Csa05g01444 Csa-Chr5:15677586 0 dispersed
Csa05g01309 Csa-Chr5:13903775 Csa05g01444 Csa-Chr5:15677586 0 dispersed
Csa05g01444 Csa-Chr5:15677586 Csa06g00814 Csa-Chr6:6513211 1.96E-19 dispersed
Csa05g01444 Csa-Chr5:15677586 Csa06g00533 Csa-Chr6:4514590 5.91E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01444 K01580 - csv:101216119 1005.74