Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01450 ATGTCTGCTTCTGACGGCGTCAACAACAACAATGGCGCCATAATTGACCCTTCTCATCAACAACACAGACATCAAATACAGGGGAATCAATCTTCCAACAATGCCGCCACCCCCTTACCCGTCAAAAAACCCCCTTCTAAAGACCGCCACAGTAAGGTCGATGGTCGTGGCCGCCGTATTCGTATGCCCATCGTTTGTGCCGCTCGTGTTTTCCAACTTACACGCGAATTAGGCCACAAATCCGATGGTCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCCTCCATTATCGCCGCCACTGGTACCGGTACCACTCCGGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGAACCCCTCCTGCCGCTTCCCTTTCCGACCATAAACCCCTTTTGCCTCCGGCGCCTTTCATTTTGGGTAAACGCGTTAGAACCGACGACGATGGAGCTAATAAAGACGACACCGGTGGGGCTGGTGCTGGGATTTCGGTTGGTCCTTCTATTGGTTCGATTATGGGTCCGGCTGTCGCGGGTGGCTATTGGGCGATTCCGGCGAGGTCGGATTTTGGGCAGGTGTGGAGCTTTGCCGCGGCTGCAGCAGCGGCGGCGGCGCCGGAGATGGTGATTCAGCCGACGGCAGTTTCTCATCAGGCGTCGTTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCAGCGAAAGTGGGAAATTACCTTCCGGGGCATTTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGGACGAAGAGACAATGACCACCGTTGA 795 55.35 MSASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRTPPAASLSDHKPLLPPAPFILGKRVRTDDDGANKDDTGGAGAGISVGPSIGSIMGPAVAGGYWAIPARSDFGQVWSFAAAAAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15790556 15792420 + CsaV3_5G020710.1 Csa05g01450 529837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01450 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 261 IPR005333 GO:0003700
Csa05g01450 264 MobiDBLite consensus disorder prediction 43 59 - -
Csa05g01450 264 MobiDBLite consensus disorder prediction 1 59 - -
Csa05g01450 264 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Csa05g01450 264 Pfam TCP family transcription factor 46 126 IPR017887 -
Csa05g01450 264 MobiDBLite consensus disorder prediction 1 39 - -
Csa05g01450 264 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00601 Csa-Chr5:3972251 Csa05g01450 Csa-Chr5:15790556 1.74E-99 dispersed
Csa05g01450 Csa-Chr5:15790556 Csa05g02171 Csa-Chr5:24700297 4.09E-36 dispersed
Csa05g01450 Csa-Chr5:15790556 Csa05g02440 Csa-Chr5:26363833 9.24E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31745 PF03634 TCP 1.80E-31 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01450 K16221 - csv:101214586 501.13