Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01482 ATGGACGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACCCCATTACTCTTCCACTCATCGCCCTCGGCTACGGCGGAAGCAGAATCCCGTAAACTTCCATCTTCCCGTTTCAAAGGAGTTGTCCCTCAGCCCAACGGCCGATGGGGTGCTCAGATTTACGAGAAACACCAAAGAGTGTGGCTCGGCACTTTCAATGAAGAAAACGATGCCGCCAAGGCTTACGATATCGCCGCCCTTCGCTTCCGTGGACGCGATGCCGTCACCAACTTCAAACCCTCCCTCAACCACGACCACGACAACGCCCTCGAGGCCGACTTCCTCAACTCCCATTCCAAGTTGGAGATTGTGGACATGCTCCGTAAACACACCTACAATGAGGAGCTCCAACAGAGCAAGCGGCAGCAGCGGGGGGCGATGGCAGTTGATTCGGGGTCGTTCCCCCATTACCCGGGGTCGGATTCAAACCGGGAAGTGCTGTTTGAGAAAACGGTGACGCCAAGTGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCTATGGAAGAGGGAGTGGTTTCGGGGAAGGGAATGCTTTTGAATTTTGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTGTTGACGAAAGGATGGAGCCGATTCGTCAAAGACAACACTCTCAGAGCCGGAGATGTGGTTCGCTTTCTCCGCTCTACTGGACCAGATAAGCAGCTTTACATTCATGCTAACCCCATCAGTGCACCGGGAATTAACCCAGTTCATGTTGTTAAGCTTTTTGGAGTCAATATTTTGCAACTGCCGGTGGGGAAGACAGAAGGGGCATTCTTGGAATTACAACAACCTACCAAGAAGCAAAGAATAATCAAACCTTTGTAA 954 52.31 MDASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENDAAKAYDIAALRFRGRDAVTNFKPSLNHDHDNALEADFLNSHSKLEIVDMLRKHTYNEELQQSKRQQRGAMAVDSGSFPHYPGSDSNREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMEEGVVSGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPISAPGINPVHVVKLFGVNILQLPVGKTEGAFLELQQPTKKQRIIKPL* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17061938 17063609 + CsaV3_5G023010.1 Csa05g01482 529869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01482 317 ProSiteProfiles AP2/ERF domain profile. 44 99 IPR001471 GO:0003700|GO:0006355
Csa05g01482 317 Pfam B3 DNA binding domain 168 266 IPR003340 GO:0003677
Csa05g01482 317 CDD B3_DNA 167 267 IPR003340 GO:0003677
Csa05g01482 317 SUPERFAMILY DNA-binding pseudobarrel domain 165 265 IPR015300 -
Csa05g01482 317 Gene3D - 158 273 IPR015300 -
Csa05g01482 317 MobiDBLite consensus disorder prediction 1 37 - -
Csa05g01482 317 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Csa05g01482 317 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 296 IPR044800 GO:0003700
Csa05g01482 317 MobiDBLite consensus disorder prediction 1 46 - -
Csa05g01482 317 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 28 296 - -
Csa05g01482 317 SMART rav1_2 44 105 IPR001471 GO:0003700|GO:0006355
Csa05g01482 317 Gene3D AP2/ERF domain 43 100 IPR036955 GO:0003700|GO:0006355
Csa05g01482 317 SMART B3_2 168 270 IPR003340 GO:0003677
Csa05g01482 317 MobiDBLite consensus disorder prediction 138 162 - -
Csa05g01482 317 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Csa05g01482 317 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Csa05g01482 317 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Csa05g01482 317 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Csa05g01482 317 ProSiteProfiles B3 DNA-binding domain profile. 168 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01482 Csa-Chr5:17061938 Csa05g02582 Csa-Chr5:27134879 4.90E-136 dispersed
Csa07g01483 Csa-Chr7:15178731 Csa05g01482 Csa-Chr5:17061938 2.34E-11 dispersed
Csa05g01482 Csa-Chr5:17061938 Csa04g00592 Csa-Chr4:3908314 6.34E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31751 PF02362 B3 5.20E-28 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01482 K09287 - csv:101206328 642.884