Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01484 ATGCAGCAAAGTTGGAAGTTGAGTTGCATATCATCCAGTGAGAGCGCATGTTTGGAAGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCACTCTCCCCTCCAGGCCAACGCACCTCGTTCTCTTCCAAACAACAACAAACCATTTACCCTAATTCTTCTCTTCAAAACCCTAATAATGATAATAATCATGAAAATGGCGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCCCCGGCCCTCTTATCCTCCACCCCGGCCGCCGTCCGACCCCTTGACTACTGGATTCCTACGCCTGCCCAAATCCTGGTTGGTCCCACCCAGTTCTCTTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGGCAGCATCATCAATGCTTAGAGTTCCATGCTATTGCTGTGCAGAAGGATGTAAGAACAATATAGAGCATCCAAGGTCAAGGCCATTAAAAGACTTTAGGACACTTCAAACACATTACAAGAGAAAGCATGGGGCAAAGCCATTCAGTTGTAGGAAATGTGGGAAGTCATTCGCTGTTAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAACATAAAAGATCCCTTAAAGATCATGTTCGTGCCTTTGGAGATGGCCATGCACCTCATACTGTTCAACTTTGTGAAGTTGAAGATGATAATGACGATGATGATTGGGAGTCGGATCATCATCATCATCAATATCTAAATGGATCACCTCAAACCTGGTCTATTTATCATTAA 861 44.6 MQQSWKLSCISSSESACLEGDEEGEESIFLSLSPPGQRTSFSSKQQQTIYPNSSLQNPNNDNNHENGAAVTVAMHIGPPPALLSSTPAAVRPLDYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKAASSMLRVPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKSFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDNDDDDWESDHHHHQYLNGSPQTWSIYH* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17144798 17145988 + CsaV3_5G023030.1 Csa05g01484 529871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01484 286 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Csa05g01484 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Csa05g01484 286 SUPERFAMILY beta-beta-alpha zinc fingers 178 215 IPR036236 -
Csa05g01484 286 Gene3D Classic Zinc Finger 152 241 - -
Csa05g01484 286 MobiDBLite consensus disorder prediction 33 64 - -
Csa05g01484 286 PANTHER ZINC FINGER PROTEIN WIP2 1 269 IPR043584 GO:0003700|GO:0010468
Csa05g01484 286 SUPERFAMILY beta-beta-alpha zinc fingers 106 133 IPR036236 -
Csa05g01484 286 Pfam Zinc finger, C2H2 type 110 129 IPR013087 -
Csa05g01484 286 Gene3D Classic Zinc Finger 109 132 - -
Csa05g01484 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 215 IPR013087 -
Csa05g01484 286 SMART c2h2final6 195 215 IPR013087 -
Csa05g01484 286 SMART c2h2final6 158 190 IPR013087 -
Csa05g01484 286 SMART c2h2final6 110 132 IPR013087 -
Csa05g01484 286 PANTHER ZINC FINGER PROTEIN WIP6 1 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01484 Csa-Chr5:17144798 Csa07g02025 Csa-Chr7:19726107 1.74E-96 dispersed
Csa05g01484 Csa-Chr5:17144798 Csa03g03608 Csa-Chr3:32155979 5.88E-99 transposed
Csa05g01484 Csa-Chr5:17144798 Csa04g01407 Csa-Chr4:14099785 4.89E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31752 PF00096 zf-C2H2 0.0093 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01484 - - csv:101216722 596.66