Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01489 ATGTCACTCCTCAATCAACTCTTTAACAGAGGTGTCTTTGCCGGAAAATGCAAAACTTGCTTGAGCTTAGCAATCTCGCGGATCAAGTTGCTGCAGAATAAGAGGGATATGCAATTGAAGCTTATGCGCAAGGAAATTGCACAATTCTTGCAGACAGGGCAGGAACAAATAGCTCGAATTCGGGTGGAACATGTAATACGGGAACAAAACATATGGGCTGCGTATGAAATTCTAGAGTTGTTTTGTGAGTTTGTTCTTGCACGTGTCCCAATCATCGAAAGCCAGAGAGAATGTCCAGTTGAACTGCGAGAGGCTATTGCAAGCATAATATTTGCTGCTCCTAGATGTTCTGACCTTCCAGATTTGCTTCAGCTGAAGAATTTGTTTGCAGTGAAATATGGGAAAGAATTTGTCTCAGCTATTTCAGAGCTTCGTCCTGATTCTGGTGTTAATCGATCTATTATTGAAAAGCTTTCAGTCAGTGCTCCTCCTGGGGAACTAAAGCTCAAGGTTATGAAGGAGATTGCTAAAGAACACGGACTCAACTGGGATTCTTCAAGCACGGCATCTGAATTTAGTAAAACCCACGAAGATCTGCTGGGCGGACCCAAGGGAGTACAAGGATCAGCAGTCTCCCAAACTCCTCAACACAGCTTGAATCCTTCCATTTCTCATGTGTCGGCACATCTTGCTGCATCTCCCATGGGAAAGAAAGAACCCGAACACCACCATGCAGTTGGCCCAATTAGCTATAATACAAATGAAATCAAACCAGAACCTAAAAGTTTTGATGTCAAACCAGAAGTTGCTGCTAAATTAGATACAAGACCTCCATCTGACGTATTAGAAAAAGCCAAAGCTGCGATTGCTTCAGCTGAGCGTGCCACTGCAGCAGCCCGAGTAGCTGCGGAGCTAGCAAATGTCAACCTTGGAACAATGAAGTTTGAAGGAGGACAAACTTCGGAGTGCTGA 972 44.14 MSLLNQLFNRGVFAGKCKTCLSLAISRIKLLQNKRDMQLKLMRKEIAQFLQTGQEQIARIRVEHVIREQNIWAAYEILELFCEFVLARVPIIESQRECPVELREAIASIIFAAPRCSDLPDLLQLKNLFAVKYGKEFVSAISELRPDSGVNRSIIEKLSVSAPPGELKLKVMKEIAKEHGLNWDSSSTASEFSKTHEDLLGGPKGVQGSAVSQTPQHSLNPSISHVSAHLAASPMGKKEPEHHHAVGPISYNTNEIKPEPKSFDVKPEVAAKLDTRPPSDVLEKAKAAIASAERATAAARVAAELANVNLGTMKFEGGQTSEC* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17197328 17214427 + CsaV3_5G023080.1 Csa05g01489 529876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01489 323 Gene3D - 5 192 IPR042277 -
Csa05g01489 323 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 14 307 - -
Csa05g01489 323 MobiDBLite consensus disorder prediction 184 264 - -
Csa05g01489 323 PANTHER IST1 FAMILY MEMBER 14 307 IPR005061 GO:0015031
Csa05g01489 323 MobiDBLite consensus disorder prediction 207 227 - -
Csa05g01489 323 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01489 - - - csv:101221764 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01489 Csa-Chr5:17197328 Csa06g00288 Csa-Chr6:2100556 3.07E-89 dispersed
Csa06g00339 Csa-Chr6:2618980 Csa05g01489 Csa-Chr5:17197328 2.34E-38 dispersed
Csa05g01489 Csa-Chr5:17197328 Csa05g02599 Csa-Chr5:27223780 4.25E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g316 . . . . . . . . . . . . . . . . Cpe01g01794 . . . . . . . . . . . . . . . . . . . . . Cme10g01545 . . . . . Bpe02g02263 Bma01g00173 . . Cmo04g02154 . Cma04g02057 . Car04g01997 . . . . . . . . . . . . . . . . . . Csa05g01489 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011875 1 1 0 1 1 1 1 1 2 1 2 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30