Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01492 ATGAACATTGTCATCGACAAAAGGCGATCCGAGGGGAGTCCTTTAGACCTCAACAACTTACCTGAAGATTATATCAGAGATGGAAAACAGATTATTGAAGATAGCTCAAGTGGTCATAGAAAAAAGAAAAGTGGGTTAAAGGAGGGAAAAGAGGAGTCGGGAAAGGTGTATGAATGCAGGTTTTGTTCACTCAAGTTCTGCAAATCGCAGGCTCTTGGTGGCCACATGAACCGCCACCGCCAAGAGAGAGAGACAGAGACACTGAATCGAGCCCGTCAGCTTGTTTTCAGTAACGATAACCTCGCCGCCCAACCTCCTCCTCCTCATTTAGGGTGCTGCCATTCAATGGCGCCGGCAAACTACCACAGTGCCGGCGGCAGTGGCAACGTAGGAAGTGATTCAACGCTGCCTCTTAGATTCCCAACCAGAATGTTCTCTGGCTCATCTCCAGGCACGCTTCTGCCACAGCCGCCCCCACCACCGCTACCTTCATCGCATCAGCCATATCTATACAACTCACCGACGCGGCCGTCTAGTTTCCCTTCCTACTATCCTCCTCCACAAGCCTCGATCAACGACTACTACGTGGGACATGTCTTGGGGAACCCTTCACAATGCAGCCATCAGACAGTGAACTACGGTTCTAGCTCGGTGGAGTCGAGTAGCTACACTTGCATCGGAGCTCCGGTAGGACATGCTGCAGTAGGGTTCGGTGGACGAGATGGTGGTGGGAGTGGCGGTAGAGATGGATCACAGCAGCAGCAGCGCTTGGACGTTCCTTCTTCGATCAATCGGTTTCAAGATGGATTCTAA 813 51.54 MNIVIDKRRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNRARQLVFSNDNLAAQPPPPHLGCCHSMAPANYHSAGGSGNVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPTRPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHAAVGFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17267461 17270047 + CsaV3_5G023110.1 Csa05g01492 529879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01492 270 MobiDBLite consensus disorder prediction 236 270 - -
Csa05g01492 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Csa05g01492 270 PANTHER ZINC FINGER PROTEIN JAGGED 8 255 IPR031113 GO:0007275
Csa05g01492 270 MobiDBLite consensus disorder prediction 1 20 - -
Csa05g01492 270 MobiDBLite consensus disorder prediction 152 167 - -
Csa05g01492 270 Gene3D Classic Zinc Finger 33 104 - -
Csa05g01492 270 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Csa05g01492 270 MobiDBLite consensus disorder prediction 247 270 - -
Csa05g01492 270 PANTHER ZINC FINGER PROTEIN JAGGED 8 255 IPR045320 GO:0003700
Csa05g01492 270 MobiDBLite consensus disorder prediction 140 180 - -
Csa05g01492 270 MobiDBLite consensus disorder prediction 30 49 - -
Csa05g01492 270 SUPERFAMILY beta-beta-alpha zinc fingers 54 85 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01492 - - - csv:101215991 447.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01492 Csa-Chr5:17267461 Csa05g02627 Csa-Chr5:27403536 2.86E-08 dispersed
Csa05g01492 Csa-Chr5:17267461 Csa05g02068 Csa-Chr5:23999272 2.39E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g315 Blo01g00498 Blo16g01066 Bda01g02073 Bda11g01152 Bpe13g01351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01152 . Bpe02g02264 Bma01g00172 Bma06g00754 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01492 . Cme09g00797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006915 2 1 2 3 2 1 2 1 1 0 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 2 0 2 1 1 37