Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01505 ATGACATCCGCCATGGCCAAACCCAAAACTCAGAGAAAGCTCAGCAGACATACCCATGAAAACCAGAAACCAAATCCACACAAGGCAGAGAAGCCGCCGTCTTGGGCAGTTGTGAGAGGCATATTAAGTTGCAAGTACCTGCAGCCTCAGCAACAACAACATCAATTACCACGCAAAGAGAAACAGGAGCAAGCAACAGAAGAAAATGTCAAGAACTGTAAGAAAATGAGGTGTTCAGGTTCACTCTGTAGCAACACCAAGGTAACACACAGGCTTGAAGCAGCTGCATCCCCTGAAGTTCACAAGAAAAGGGCATTAACTTCAATGGGTTCAAGAAACAATGAATCTTCAAGTTCGAATAGATCCACTAAAGCTCTTCTTTTGAATGAACAAACAACTGGTGTTCTATCAGCCACATCTTCATCTTTATCTGCATCATCTTCTTCTTCAAATTCCTCTAATGGGGCATCTTTCAGGGGAATGCCTTTCAGAAGGTTTTACGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGACCCTTCTCTTAGAGCGACTATTTGCCCTTGTCCTCAATGTGGTGAGATTTTCATGAAACCTGAAACTTTGGAGCTTCACCAGACTGTTAGACATGCCGTATCTGAGCTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAGTCGAGTTGGCTGAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAAACCATCTCGAAATTCGAGGAATACAGGGACTCCATAAAAGCCAAAGCCACCAAACTTCCAAAGAAGTACCCACGTTGTATAGCAGACGGTAACGAACTCCTAAGGTTCCACTGCACCACCTTGAACTGTTCATTGGGTTTCAATGGCTCTTCCAACCTCTGCAGTTCAATCCCACAATGCAATGTTTGTAGCATAATAAAAAATGGGTTCAAGATGGCGGCAGAGGCAACCGGTGGGGACGCTGGAAAGGGAATTCTAACTACTGCTACGAGTGGAAAGGCTCATGACAGTGTCGGAGTATCATCAGACGGCGGCAACAACAAAAGAGCTATGCTGGTTTGCCGGGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGCAGCATGGAAGATTACGACTCATTGGCCGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTTATTTATGGAGGTTTTTGA 1284 44.16 MTSAMAKPKTQRKLSRHTHENQKPNPHKAEKPPSWAVVRGILSCKYLQPQQQQHQLPRKEKQEQATEENVKNCKKMRCSGSLCSNTKVTHRLEAAASPEVHKKRALTSMGSRNNESSSSNRSTKALLLNEQTTGVLSATSSSLSASSSSSNSSNGASFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRATICPCPQCGEIFMKPETLELHQTVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLNCSLGFNGSSNLCSSIPQCNVCSIIKNGFKMAAEATGGDAGKGILTTATSGKAHDSVGVSSDGGNNKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17444431 17446591 - CsaV3_5G023240.1 Csa05g01505 529892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01505 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 221 IPR013087 -
Csa05g01505 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 424 - -
Csa05g01505 427 MobiDBLite consensus disorder prediction 109 123 - -
Csa05g01505 427 MobiDBLite consensus disorder prediction 1 35 - -
Csa05g01505 427 MobiDBLite consensus disorder prediction 56 71 - -
Csa05g01505 427 Gene3D - 217 425 - -
Csa05g01505 427 SUPERFAMILY ADP-ribosylation 218 425 - -
Csa05g01505 427 MobiDBLite consensus disorder prediction 94 108 - -
Csa05g01505 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 424 - -
Csa05g01505 427 MobiDBLite consensus disorder prediction 94 123 - -
Csa05g01505 427 MobiDBLite consensus disorder prediction 49 71 - -
Csa05g01505 427 ProSitePatterns Zinc finger C2H2 type domain signature. 193 216 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02277 Csa-Chr3:20266289 Csa05g01505 Csa-Chr5:17444431 1.45E-68 dispersed
Csa03g04274 Csa-Chr3:37462852 Csa05g01505 Csa-Chr5:17444431 1.34E-107 dispersed
Csa05g01505 Csa-Chr5:17444431 Csa06g01436 Csa-Chr6:12247447 1.14E-64 dispersed
Csa05g01505 Csa-Chr5:17444431 Csa03g00581 Csa-Chr3:5040183 9.84E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31754 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01505 - - csv:101220433 825.469