Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01509 ATGCATTCTTTCTGCTGTGTTTCTACTCTCTCCGATAACTCCCCTTCTAAGCAACCCCCCTATTCGATGCCTGACCTTCATATTTCCCCACCCTCTCCTTCTCTCTCTCTTGCCTCCAGATCCGATCCCACCATTCGAATTTCCAGTCATGCTCATAATCGGAGTCTTAGTAGTAGCGATGTTGGACGTCTTAGCCAACGGAGTATTTTTGCTGCTGAGATGGTTGCACGCCATTCCTCTGCTAGGGAGCCTCCGGTTGACGTCAAGATCAATGATATTGTTGGCAATGGTATTTGTGGTATTCTCTATAAGTGGGTCAACTACGGCAAAGGTTGGCGTCCTCGTTGGTTTGTGCTTCAGGATGGCGTTTTGTCTTACTATAAGATTCATGGACGTGATAAGATCGTTGTCAATCAGGAAACAGAGAAGGGATCCAAGGTCATCGGCGAGGTCTCCATGCGGAGGATTTCCAGGCATAAGAACGGCTTCTCTAATCAGACTCCTCAGCTCCCACTCAGGCGCAAGCCATTTGGGGAAGTTCATCTCAAGGTTTCGTCTGTTCGAGAAAGCCGATCAGATGATAAGAGGTTTTCCATCTTCACTGGGACAAAGAGACTTCACTTGCGGGCAGAGACCCGCGAGGATCGGGTGGCATGGATGGAAGCATTGCGGGCAGTGAAAGAATTATTCCCAAGGATGTCTAACAGTGAGCTCATGGCGCCTATGGATTTCCTATCTGTGTCAACTGACAGGATTAGACAGCGGCTTCTTGAAGAAGGTGTAAGTGAAACAGCCATTCAGGACACTGAAAATATTATGAAGACTGAATTTGCTGCGTTGCAAAACCAGCTTTTGCTGCTCAAGCAGAAGCAGTGGCAACTTATTGACACACTGCGGCACTTAGAGACAGAAAAGGTTGACTTGGAGAATACAGTAGTTGATGAGAGCCAGAGACAGTCAAATGAGCCTGGGGCCTTGCCTGGTCTGCTGGAAAAGTTTAGTGATGCAAGTGCAAGTGCGACTGAATCTGATGATGATAATGATAGAGTCGATGCTGCCGAGGAAGAAACAGATGAGGAAGAAAACACCTTTTTTGACACTCGAGATTTTTTATCATCAAGTTCATTCAAAAGTAATGGATCTGATTACAGGATATCATCTTTCTCTTCTGATGATGAAGGCCTTTGTACAGTTGACTCTGAGGAAGATGTGGATCCATCAATTAGATCTGTTGGAATGAATTATCCCTATGTTAAACGGCGCAAGAAATTACCTGATCCAGTTGAAAAGGAGAAGGGAGTTAGTCTTTGGTCAATGATTAAAGACAACATTGGAAAAGATCTCACTAAAATTTGTCTTCCTGTCTTCTTCAATGAGCCTCTTTCTTCTCTGCAAAAGTGTTTTGAAGATTTAGAATATTCATACCTCATTGATCGGGCATATGAATGGGGGAGAAGGGGTGACAGTCTCATGAGGATTCTTAATGTAGCTGCATTTGCTGTATCTGGGTATGCTTCAACTGAAGGAAGAAGTTGTAAACCATTTAACCCACTGTTGGGGGAAACTTATGAGGCTGACTTTCCAGATAAAGGTCTCAAGTTTTTCTCAGAGAAGGTTAGCCATCATCCAATGGTAGTTGCATGCCATTGCGAGGGTAAAGGGTGGAGATTTTGGGGTGATAGCAATTTGAAGAGCAAATTTTGGGGTCGGTCCATTCAGCTTGATCCTGTTGGTCTATTGACATTAGAATTTGATGATGGAGAAGTCTATCAATGGAGTAAGGTGACAACGTCTATTTACAACCTGATATTGGGAAAGCTATACTGTGATCATTATGGTACAATGCGCATACAGGGAAATCGTGAATATTCGTGCAAACTAAAATTCAAGGAGCAGTCCATTATTGATAGGAATCCACACCAGGTACAGGGTATAGTTCAAGATAGATCTGGAAGGACAGTGGCTACATTATTTGGAAAATGGGATGAAAGTATGCATTATATGAATGGGGACTGTCCCCATAAGGGAAAAGGATTGGATTCTTTATCTGAATCCCACCTACTCTGGAAACGAAGCAAGCCACCAAAATTTTCTACTAGATATAACTTCACGCGCTTTGCTATAACTTTGAATGAGCTGACACCAGGCTTGAAGGAAAACTTGCCTCCTACAGATTCGAGGCTCAGACCTGATCAAAGGTATTTAGAAAATGGAGAGTATGAAATGGCTAACTCAGAAAAGTTGCGATTGGAGCAACGCCAACGTCAGGCTAGGAAGATGCAAGAAAGAGGGTGGAAACCAAGGTGGTTTGCCAAAGATAAGGGAAGTGATGCCTATCGTTACATTGGTGGGTACTGGGAAGCCAGAGAGCAGGGAAAATGGGACTCATGCCCTGATATATTCGGTCAGATCCCTACTGATCCCCAACTCGAGTGA 2436 44.01 MHSFCCVSTLSDNSPSKQPPYSMPDLHISPPSPSLSLASRSDPTIRISSHAHNRSLSSSDVGRLSQRSIFAAEMVARHSSAREPPVDVKINDIVGNGICGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGRDKIVVNQETEKGSKVIGEVSMRRISRHKNGFSNQTPQLPLRRKPFGEVHLKVSSVRESRSDDKRFSIFTGTKRLHLRAETREDRVAWMEALRAVKELFPRMSNSELMAPMDFLSVSTDRIRQRLLEEGVSETAIQDTENIMKTEFAALQNQLLLLKQKQWQLIDTLRHLETEKVDLENTVVDESQRQSNEPGALPGLLEKFSDASASATESDDDNDRVDAAEEETDEEENTFFDTRDFLSSSSFKSNGSDYRISSFSSDDEGLCTVDSEEDVDPSIRSVGMNYPYVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKICLPVFFNEPLSSLQKCFEDLEYSYLIDRAYEWGRRGDSLMRILNVAAFAVSGYASTEGRSCKPFNPLLGETYEADFPDKGLKFFSEKVSHHPMVVACHCEGKGWRFWGDSNLKSKFWGRSIQLDPVGLLTLEFDDGEVYQWSKVTTSIYNLILGKLYCDHYGTMRIQGNREYSCKLKFKEQSIIDRNPHQVQGIVQDRSGRTVATLFGKWDESMHYMNGDCPHKGKGLDSLSESHLLWKRSKPPKFSTRYNFTRFAITLNELTPGLKENLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQARKMQERGWKPRWFAKDKGSDAYRYIGGYWEAREQGKWDSCPDIFGQIPTDPQLE* 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17523065 17534103 + CsaV3_5G023280.1 Csa05g01509 529896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01509 811 MobiDBLite consensus disorder prediction 1 25 - -
Csa05g01509 811 Pfam Oxysterol-binding protein 435 790 IPR000648 GO:0008289
Csa05g01509 811 SMART PH_update 96 230 IPR001849 -
Csa05g01509 811 Coils Coil 343 363 - -
Csa05g01509 811 MobiDBLite consensus disorder prediction 1 20 - -
Csa05g01509 811 SUPERFAMILY Oxysterol-binding protein-like 430 805 IPR037239 -
Csa05g01509 811 Gene3D - 732 794 - -
Csa05g01509 811 Coils Coil 298 318 - -
Csa05g01509 811 Gene3D - 521 695 - -
Csa05g01509 811 SUPERFAMILY PH domain-like 98 233 - -
Csa05g01509 811 ProSiteProfiles PH domain profile. 95 228 IPR001849 -
Csa05g01509 811 Coils Coil 740 763 - -
Csa05g01509 811 MobiDBLite consensus disorder prediction 347 363 - -
Csa05g01509 811 Pfam Pleckstrin homology domain 99 224 - -
Csa05g01509 811 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 62 805 IPR000648 GO:0008289
Csa05g01509 811 MobiDBLite consensus disorder prediction 336 364 - -
Csa05g01509 811 CDD PH_ORP_plant 98 235 - -
Csa05g01509 811 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 62 805 - -
Csa05g01509 811 Gene3D - 96 230 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01509 K20456 OSBP; oxysterol-binding protein 1 - csv:101214552 1592.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02431 Csa-Chr1:21540450 Csa05g01509 Csa-Chr5:17523065 1.44E-47 dispersed
Csa05g00404 Csa-Chr5:2663368 Csa05g01509 Csa-Chr5:17523065 0 dispersed
Csa05g01509 Csa-Chr5:17523065 Csa05g02254 Csa-Chr5:25193679 0 dispersed
Csa05g01509 Csa-Chr5:17523065 Csa03g00298 Csa-Chr3:2468170 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004129 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 2 44