Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01522 ATGAATCGTCTCCCTCAGTTTTTCTCTCCTAGGAACAAAAGAAAACCCATGGATCCCAGGAAAATTCCAGGGAAACCCAAGCTTGGCCGACTTAATGCGGCCAAGAATATTGATTATGATGCTCCTTCCTCGTCTTCTTCGCTCGAAGATTCTTCTGGGTCTCTTTACACTCGTTCCATGGAAAACCCCGATCCCTCCAGTTTTCGGATTAAAGGGCTTGACGGTGAAGTTGATCTCATATGTCGGACCCTAGGGCTAGCTGGCCCTGACGACTTTGCTATTCCGATGGAGGCTTGGGAGGCTAGAAAGGTTCGTTCATCTTCCGAGCTTCTACCGAGGTCGAGGCTGTATCCTATGGATACCTCTCCGAAGACAGAGGAGATTAGTGAGGATAAGGAAGATAAAGAAATTCAAGATGAATTATGTCGGAGGGTTAAGGATTCAGTTCGAATTAGCGTCGACCTTTCCAAGACAAAGACCGAATTTGCAGAGTTGAATGAACGCCGGATGGCTACTGCTACTGGATGTAGTTCGAGAAGTGGAATCAATGGTGCCCGGCCTCCTTTACTTAAGCCGCCGCCGTCCATGCGGCTACCAAATTTTGATAATGCTTACTCTACTTGGGACATTTTGAAAGGTTTTGCTCCATTAGTTGAGGATGAACATCAAGAGGAAGTAGGAGAACGTGTGGAACCTTTAGTTGAAGTAGAAGGAGAAGGAGAAGGAAATACAGTAAGGCCTGTGGAGAACGCATCGCTCATAGGGTCTTGGGGTTCCTTCACGACATCGAATGATGATGATTCTTCAAGCAGTACTACGGAGCCTGCAAATATTTCACCCAATATGAGAGTTAATCCCATTATCACATCCTGGGTTTTAGGCAGGCTTCTTGGGCGCGGTTCATTTGGATCAGTATACGAAGCAATTTCAGAGGATGGGACATTTTTTGCACTCAAAGAAGTTTCACTGCTCGATGAAGATAGTCAGGGAAGACAAAGTATCTATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAGTACTATGGCACACATTCGGATGGGTCAAAACTATATATCTTCCTCGAGCTTGTATCTCAAGGCTCCCTTATGAGTCTATATCAGAGGACAAGCCTTATGGATTCCATTGTTTCTGCCTACACAAGGCAGATCCTATCGGGTTTAAAGTATCTTCACGAGCGAAATGTGATTCACAGGGATATTAAATGTGCTAATATATTGGTGGACGTGAATGGATCTGTGAAGCTTGCAGATTTTGGTTTGGCAAAGGCAACAAAATTGAACGATGTTAAATCTTGTAAGGGAACTGCGTATTGGATGGCACCTGAGGTGGTTAATGGGAAGGGTCAAGGATATGGTCTACCTGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACCCGAAAGCTTCCATATTCAGAATTTGAATCTCATATGCAGGCACTATTTAGGATCGGAAAAGGCAAACCGCCTGCAGTTCCTGAGTCTCTCCCAAAAGATGCACAGGATTTCATTCTGCAGTGCCTACAAGTTAATCCAAAGGACCGTCCTACTGCTGCTGATCTTTTAAATCACTCGTTTGTGAAAAGACCAGTCTCCAGTTTATCAGGGTTGGCATCTCCTTATAACAGGCCAGGCAGGAGGATTTAA 1701 44.8 MNRLPQFFSPRNKRKPMDPRKIPGKPKLGRLNAAKNIDYDAPSSSSSLEDSSGSLYTRSMENPDPSSFRIKGLDGEVDLICRTLGLAGPDDFAIPMEAWEARKVRSSSELLPRSRLYPMDTSPKTEEISEDKEDKEIQDELCRRVKDSVRISVDLSKTKTEFAELNERRMATATGCSSRSGINGARPPLLKPPPSMRLPNFDNAYSTWDILKGFAPLVEDEHQEEVGERVEPLVEVEGEGEGNTVRPVENASLIGSWGSFTTSNDDDSSSSTTEPANISPNMRVNPIITSWVLGRLLGRGSFGSVYEAISEDGTFFALKEVSLLDEDSQGRQSIYQLQQEIALLSEFEHENIVQYYGTHSDGSKLYIFLELVSQGSLMSLYQRTSLMDSIVSAYTRQILSGLKYLHERNVIHRDIKCANILVDVNGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSEFESHMQALFRIGKGKPPAVPESLPKDAQDFILQCLQVNPKDRPTAADLLNHSFVKRPVSSLSGLASPYNRPGRRI* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17767126 17773351 - CsaV3_5G023410.1 Csa05g01522 529909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01522 566 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Csa05g01522 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Csa05g01522 566 SMART serkin_6 291 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01522 566 Pfam Protein kinase domain 294 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01522 566 MobiDBLite consensus disorder prediction 115 135 - -
Csa05g01522 566 Gene3D Transferase(Phosphotransferase) domain 1 289 558 - -
Csa05g01522 566 PRINTS Tyrosine kinase catalytic domain signature 369 382 IPR001245 GO:0004672|GO:0006468
Csa05g01522 566 PRINTS Tyrosine kinase catalytic domain signature 404 422 IPR001245 GO:0004672|GO:0006468
Csa05g01522 566 PRINTS Tyrosine kinase catalytic domain signature 470 492 IPR001245 GO:0004672|GO:0006468
Csa05g01522 566 PRINTS Tyrosine kinase catalytic domain signature 514 536 IPR001245 GO:0004672|GO:0006468
Csa05g01522 566 MobiDBLite consensus disorder prediction 173 195 - -
Csa05g01522 566 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 25 127 - -
Csa05g01522 566 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 118 555 - -
Csa05g01522 566 MobiDBLite consensus disorder prediction 259 279 - -
Csa05g01522 566 ProSiteProfiles Protein kinase domain profile. 291 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01522 566 MobiDBLite consensus disorder prediction 38 64 - -
Csa05g01522 566 SUPERFAMILY Protein kinase-like (PK-like) 289 549 IPR011009 -
Csa05g01522 566 MobiDBLite consensus disorder prediction 1 69 - -
Csa05g01522 566 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 25 127 - -
Csa05g01522 566 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 118 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01506 Csa-Chr5:17454731 Csa05g01522 Csa-Chr5:17767126 2.75E-22 dispersed
Csa05g01522 Csa-Chr5:17767126 Csa06g02776 Csa-Chr6:24207515 5.65E-77 dispersed
Csa05g01522 Csa-Chr5:17767126 Csa06g02922 Csa-Chr6:25325579 3.45E-73 transposed
Csa05g01522 Csa-Chr5:17767126 Csa02g02001 Csa-Chr2:18601356 1.01E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78246 PF00069 Pkinase 1.40E-69 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01522 K13414 - csv:101218538 1068.91