Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01535 ATGGGCTCCATAGACGTCCAATCAACCAGCGCTGAAAATGGATCCGCCTCCGCCTCTGCTGATGGTCGTCAAAAGTCACTTCCCACCGACGGTATGAACCACACATCTAACGACCCAGACGGAGCGCCCCCTGATAAGCCTAAGGAATTGGGCCCGACGAAGAAACGTTTGTCCTCCATGCTTCCTCTGGATGTCGGGACCCGTGTCATGTGCCGCTGGAGGGACGGGAAGTACCATCCCGTTAAGGTCATTGAACGTCGCAAGTTGCAGGCAATTGGTTTTAGTGATTACGAATACTATGTCCATTACACCGAGTTCAATAGGAGACTTGATGAGTGGGTGAAGCTTGACCAACTTGATCTTGATTCGGTTGAGACGGTTGTTGATGAGAAAGTGGAGGACAAGGTAACAGGACTGAAGATGACCCGGCACCAGAAGCGGAAGATTGACGAAACCCATGTTGAGGGCCATGAGGAACTTGATGCTGCCAGCTTGAGGGAGCATGAAGAATTCACGAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATATGAGATTGAGACATGGTATTTCTCCCCATTTCCACCAGAGTACAATGACACTACAAAGCTCTATTTTTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAAGAACAACTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATATATCGATGCGGTACTTTGTCAATGTTTGAGGTTGATGGAAAAAAGAACAAGGTTTATGGGCAGAATCTGTGTTACTTAGCAAAGTTATTTCTGGACCACAAGACTCTCTACTATGATGTTGACCTTTTTCTGTTTTATGTCCTGTGTGAGTGTGATGATCGAGGGTGTCACATGGTTGGATATTTTTCAAAGGAAAAGCATTCAGAGGAATCCTATAATTTGGCATGCATTCTCACCCTTCCTCCTTATCAAAGGAAGGGCTACGGGAAGTTCTTAATAGCATTTTCTTATGAACTCTCCAAGAAGGAAGGTAAAGTTGGCACTCCTGAAAGACCTCTTTCAGATCTTGGGTTGGTGAGCTACAGAGGATACTGGACCAGAGTTCTTTTGGACATCTTGAAAAAGCACAAGGCCAATATCTCGATCAAGGAGCTAAGTGACATGACAGCTATCAAAGCCGAAGATATTTTGAACACACTTCAAAGCCTGGAGTTGATACAATACAGGAAAGGGCAGCATGTTATATGTGCTGACCCTAAGGTACTGGATCGTCATCTCAAAGCTGCTGGTCGTGGGGGCCTAGAGGTGGATGTGAGCAAATTGATCTGGACTCCATACAGAGAACAGGGTTGA 1347 45.29 MGSIDVQSTSAENGSASASADGRQKSLPTDGMNHTSNDPDGAPPDKPKELGPTKKRLSSMLPLDVGTRVMCRWRDGKYHPVKVIERRKLQAIGFSDYEYYVHYTEFNRRLDEWVKLDQLDLDSVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLVSYRGYWTRVLLDILKKHKANISIKELSDMTAIKAEDILNTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYREQG* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17914992 17921238 + CsaV3_5G023540.1 Csa05g01535 529922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01535 448 Pfam MYST family zinc finger domain 174 228 IPR040706 -
Csa05g01535 448 Gene3D - 231 443 - -
Csa05g01535 448 SUPERFAMILY Chromo domain-like 55 173 IPR016197 -
Csa05g01535 448 CDD NAT_SF 284 342 - -
Csa05g01535 448 CDD CBD_MOF_like 66 135 - -
Csa05g01535 448 Gene3D - 351 431 IPR036388 -
Csa05g01535 448 Pfam RNA binding activity-knot of a chromodomain 63 121 IPR025995 -
Csa05g01535 448 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 10 447 - -
Csa05g01535 448 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 173 444 IPR016181 -
Csa05g01535 448 MobiDBLite consensus disorder prediction 1 36 - -
Csa05g01535 448 Gene3D - 54 172 - -
Csa05g01535 448 SMART chromo_7 77 136 IPR000953 -
Csa05g01535 448 MobiDBLite consensus disorder prediction 1 59 - -
Csa05g01535 448 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 172 443 IPR002717 GO:0004402|GO:0006355|GO:0016573
Csa05g01535 448 PANTHER HISTONE ACETYLTRANSFERASE 10 447 - -
Csa05g01535 448 Pfam MOZ/SAS family 233 410 IPR002717 GO:0004402|GO:0006355|GO:0016573
Csa05g01535 448 Gene3D - 173 229 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01535 K11308 - csv:101217824 920.613