Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01545 ATGGACTCAAGGGGCCATTCTAATGGCGGAGAACTTGAAACAAATGAGATGGACATTAGAAATCTTTCGTCTTCACGCAACAATACTCACTGCGTCCATAAGGTGGGGGTTCCACCGAAGCAAAATCTCTTCAAAGAATTTAAAACCAGAGTGAAAGAGACATTCTTTGCAGATGATCCTCTGCGAACCTTCAAGGACCAATCGAAGTCCCGAAAGCTAGTCCTAGGAATTCAGGCTATCTTCCCTATATTTGAATGGGGGAGGAATTACAATCTAACTAAATTTAGAGGAGATATAGTTGCTGGACTCACTATTGCAAGTTTGTGTATTCCACAGGATATAGGGTATGCAAAACTTGCTAATTTGGCTCCCCAGTATGGATTATATTCCAGCTTTGTACCACCACTAGTTTATGCTTTGATGGGTAGCTCAAGAGACATAGCGATTGGACCAGTGGCCGTTGTTTCTCTCTTGCTGGGAACACTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGGCTTGCATTTACAGCTACCTTTTTTACTGGGATCACCCAAGCCACTCTAGGGATACTAAGGTTGGGTTTTCTGATTGACTTTCCATCTCATGCTGCCATTGTGGGTTTTATGGGTGGTGCTGCCATCACTATTGCCCTTCAGCAACTTAAAGGCTTTCTTGGTATTCAAAAATTGACAAAGAAAACAGACATTATCTCTGTAATGCGCTCAGTATTTGAGGCAACGCATCATGGAGTAAGCCTCCTTGCCCTTCAAACCTTAGATGTCTATGGTGTTTATTTGCAGACAAATGGATCACTGATGCATAACAAACTAAATCTCATGTATCGTAACTTCTTTTATGACCTTTTGCAGTGGAACTGGCAGACAATAGTCATTGGAGTAGCTTTTCTAAGTTTTCTACTGTTTGCCAAAGCTTTCACGCTCCAATCTCAGGGAAAGAAGAATAAGAACCTCTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTTATTCTGTCCACCTTCTTTGTTTACATAACCCATGCAGACCAGAAAGGTGTTGCAATAGTGAAACATATAGAGAGAGGAATCAACCCCTCATCCGTGAAGCAAATCTACTTCACAGGTGACAACCTCCTTAAAGGATTCAGGACTGGCGTGGTGGCTGGTATGATAACATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTACCATGAAAGACTACCAGCTTGATGGTAACAAAGAAATGGTGGCACTAGGAACAATGAATGTTATTGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCGTTCTCTCGCTCAGTTGTGAATTACATGTCTGGCTGTCAAATTGCGGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTTTAGAATTCATCACTCCCCTATTCAAATACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAAGCAGCAATTTTGCTCTGGAAGATTGATAAATTTGATTTTGTTGCTTGCTTGGGAGCCTTCTTCGGTGTGATATTTGCAAGTGTTGAGATAGGCCTCCTAATTGCTATATCTGATTCTGTCTTCGATGTGCTGGAGCAGGTCTCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTCTCTGTTCTCGGAAAAATCCCTAGGACTACAGTATATAGGAACACTCAACAGTATCCAGAAGCAACAAGGGTTCCAGGCATTCTCATTGTGAGAGTTGATTCTGCGATTTACTTTTCTAACTCCAATTACATCAAAGAGAGGATATTGAGATGGTTGGCAGATGAGGAAGAACAAACAAAGAAGGCCTATTCACCAAAAACTCAGTTTTTGATTGTTGAGATGTCTCCTGTTACCGACATTGATACTAGTGGAATTCATGCCTTGGAAGAGCTATACAATAATCTCCAGAAAAGAGACATTCAGCTTGTTTTGGCAAACCCGGGGCCAGTAGTGATTGACAAACTCCACACATCTGATGTTACTAATCTGATTGGGGAGGACCATATCTTTCTAACAGTTGCTGAAGCTATATCATCCTGCTCCCCAAAATTGGTGGAAGAGGCCTAA 2145 41.54 MDSRGHSNGGELETNEMDIRNLSSSRNNTHCVHKVGVPPKQNLFKEFKTRVKETFFADDPLRTFKDQSKSRKLVLGIQAIFPIFEWGRNYNLTKFRGDIVAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFTGITQATLGILRLGFLIDFPSHAAIVGFMGGAAITIALQQLKGFLGIQKLTKKTDIISVMRSVFEATHHGVSLLALQTLDVYGVYLQTNGSLMHNKLNLMYRNFFYDLLQWNWQTIVIGVAFLSFLLFAKAFTLQSQGKKNKNLFWVPAIAPLISVILSTFFVYITHADQKGVAIVKHIERGINPSSVKQIYFTGDNLLKGFRTGVVAGMITLTEAIAIGRTFATMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSVVNYMSGCQIAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAISDSVFDVLEQVSISFAKILLQVTRPRVSVLGKIPRTTVYRNTQQYPEATRVPGILIVRVDSAIYFSNSNYIKERILRWLADEEEQTKKAYSPKTQFLIVEMSPVTDIDTSGIHALEELYNNLQKRDIQLVLANPGPVVIDKLHTSDVTNLIGEDHIFLTVAEAISSCSPKLVEEA* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18066483 18070681 - CsaV3_5G023640.1 Csa05g01545 529932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01545 714 PANTHER SULFATE TRANSPORTER 18 258 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01545 714 TIGRFAM sulP: sulfate permease 82 702 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01545 714 SUPERFAMILY SpoIIaa-like 585 707 IPR036513 -
Csa05g01545 714 PANTHER SULFATE TRANSPORTER 290 713 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01545 714 Pfam STAS domain 584 702 IPR002645 -
Csa05g01545 714 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Csa05g01545 714 PANTHER SULFATE TRANSPORTER 1.3 290 713 - -
Csa05g01545 714 Gene3D STAS domain 563 709 IPR036513 -
Csa05g01545 714 ProSiteProfiles STAS domain profile. 583 706 IPR002645 -
Csa05g01545 714 Pfam Sulfate permease family 95 520 IPR011547 GO:0016021
Csa05g01545 714 CDD STAS_SulP_like_sulfate_transporter 584 699 - -
Csa05g01545 714 PANTHER SULFATE TRANSPORTER 1.3 18 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01847 Csa-Chr4:18135773 Csa05g01545 Csa-Chr5:18066483 0 dispersed
Csa05g01545 Csa-Chr5:18066483 Csa07g00534 Csa-Chr7:3923526 0 dispersed
Csa05g01545 Csa-Chr5:18066483 Csa05g01553 Csa-Chr5:18148308 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01545 K17470 - csv:101212138 1232.24