Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01553 ATGGATTCCTTGCCTTCCCAAACTTTCTCTGTAGAAATCACCGACAACCATATTCATGCCGGCGCCGTTGCCGTTCCCGGAGCACAAACCTCTGAATGGCTACTCAATTCCCCCGACCCTCCAACTTTCTGGGAACAAATTGTCGGAGTCATCAACGAAACTGCCATTCCTCGAAGTTGCAGAAAGAACCCAAACAAAAAAGTTTCTTCTTCAAGCTCTGAAAAACAGAGCATTTTCAAAACTATAATTACCCTTTTGCAAAGAGTGTTCCCCATCCTTAAATTAGCTCGAAATTACAAAGCTTCCAAGTTCAAAAACGACCTCATGGCTGGTTTAACACTCGCCAGTCTCTGCATACCTCAAAGTATTGGGTATGCTAATTTGGCGAAGCTTGATCCGCAGTTTGGTCTATATACAAGTGTTGTTCCTCCTTTGATTTATGCATTTATGGGGAGTTCAAGAGAGATCGCAATTGGACCAGTGGCTGTGGTTTCATTGCTTCTTTCATCTATGCTTCAAGAAATTCAAGATCCTGTTGCTGATCCTGTTGCTTATAGACGCCTTGTTTTCACTGTCACTTTGTTTGCTGGGATTTTCCAAGCTTCATTTGGCCTCTTGAGATTGGGTTTTCTTGTGGACTTTTTGTCTCATGCTGCCATTGTTGGGTTCATGGCTGGAGCTGCCATTCTCATTGGTCTTCAACAAATGAAAGGATTGCTTGCAATCAGCAATTTCACTACCAAAACTGATGTGGTTTCTGTATTGAAATCTGTTGTCAGATCTGTTCATCAAACATGGTACCCTTTGAACATTGTAATTGGCTGCTCCTTCCTAATCTTTCTCCTTGTAGCCAGGTTCATAGGGAGAAGGAATAAGAAGCTGTTTTGGGTGTCAGCCATTGCTCCTCTCATATCAGTAATTCTTTCAACTTTGATAGTGTTTGTTTCAAGAGCTGACAAACATGGAGTCAAGATCGTGAAGGAAGTGAAAGAAGGACTGAACCCAATTTCCATTCATCAGCTTCAATTGAATAGCACAACTGTTGGGTTAGCTGCGAAATCTGGCCTTATTGCTGCCCTTATAGCTCTCACAGAAGCTATTGCGGTAGGCCGATCGTTTGCGTCGATTAAAGGGTACAACATTGATGGGAACAAGGAGATGATAGCCATTGGATTCATGAACATAATAGGCTCTTTAACGTCTTGTTACATAGCAACTGGGTCATTCTCAAGAACTGCAGTGAATTATAGTGCTGGATGTGAAAGTGTACTGTCAAATATAGTGATGGCAATAACAGTGATGGTGACACTCCAATTTTTTACTCGGTTTTTATACTTCACTCCAATGGCAATTTTGGCATCAATAATTCTATCAGCTCTTCCTGGTCTTGTTGATATAAATGAAGCTGTGCGTATATGGAAGGTTGACAAGCTTGACTTTCTTGCTTGTCTTGGAGCTTTCCTTGGTGTCTTGTTTCATTCGGTGGAATTTGGCCTTCTTGTGGCGGTTGGAATTTCATTTGCAAAGATATTGTTGATTTCAATAAGACCAGGGACTGAAGAGGTGGGAAGGCTTCCAAGGAGTGACATGTTTTGTAACAGGAAGCAATTTCCCATGGCCACCAAAACTCAAGGATTCTCCATTATCAGAATTAACTCTGCCTTGCTTTGTTTTGCCAATGCCAGTTTCATTAGGGACAGGATAATGAGATTAGTAGAAGAAGATGAAGATGGTGATGATATTGCAATAAAAGATCAGCCTAAACAACTTGTTGTTGACATGTGCAATGTCATGAGTATCGATACATCAGGAATCATTGTTTTAGAGGAACTTCACAAAAGGTTGTTGTTACATGGCATACAACTAACAATAGCAAGTCCAAAATGGGAAGTGATCCACAAACTAAAAAAAACAAAGTTTGTTGAAAGAATTGAAGGAAGGGTTTTCCTATCGGTAGGTGAAGCTGTGGATTCTTGCATTGGAAATGCATCCAAATTTCCTTCTCCCTAA 2010 40.9 MDSLPSQTFSVEITDNHIHAGAVAVPGAQTSEWLLNSPDPPTFWEQIVGVINETAIPRSCRKNPNKKVSSSSSEKQSIFKTIITLLQRVFPILKLARNYKASKFKNDLMAGLTLASLCIPQSIGYANLAKLDPQFGLYTSVVPPLIYAFMGSSREIAIGPVAVVSLLLSSMLQEIQDPVADPVAYRRLVFTVTLFAGIFQASFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAISNFTTKTDVVSVLKSVVRSVHQTWYPLNIVIGCSFLIFLLVARFIGRRNKKLFWVSAIAPLISVILSTLIVFVSRADKHGVKIVKEVKEGLNPISIHQLQLNSTTVGLAAKSGLIAALIALTEAIAVGRSFASIKGYNIDGNKEMIAIGFMNIIGSLTSCYIATGSFSRTAVNYSAGCESVLSNIVMAITVMVTLQFFTRFLYFTPMAILASIILSALPGLVDINEAVRIWKVDKLDFLACLGAFLGVLFHSVEFGLLVAVGISFAKILLISIRPGTEEVGRLPRSDMFCNRKQFPMATKTQGFSIIRINSALLCFANASFIRDRIMRLVEEDEDGDDIAIKDQPKQLVVDMCNVMSIDTSGIIVLEELHKRLLLHGIQLTIASPKWEVIHKLKKTKFVERIEGRVFLSVGEAVDSCIGNASKFPSP* 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18148308 18155445 + CsaV3_5G023720.1 Csa05g01553 529940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01553 669 TIGRFAM sulP: sulfate permease 91 652 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01553 669 CDD STAS_SulP_like_sulfate_transporter 537 650 - -
Csa05g01553 669 Gene3D STAS domain 517 661 IPR036513 -
Csa05g01553 669 Pfam Sulfate permease family 104 484 IPR011547 GO:0016021
Csa05g01553 669 PANTHER SULFATE TRANSPORTER 2.2 28 663 IPR030315 GO:0008272|GO:0015116
Csa05g01553 669 PANTHER SULFATE TRANSPORTER 28 663 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01553 669 Pfam STAS domain 539 655 IPR002645 -
Csa05g01553 669 ProSitePatterns SLC26A transporters signature. 133 154 IPR018045 GO:0008271|GO:0008272
Csa05g01553 669 ProSiteProfiles STAS domain profile. 556 659 IPR002645 -
Csa05g01553 669 SUPERFAMILY SpoIIaa-like 542 659 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00482 Csa-Chr4:3099874 Csa05g01553 Csa-Chr5:18148308 0 dispersed
Csa05g01553 Csa-Chr5:18148308 Csa07g00534 Csa-Chr7:3923526 0 dispersed
Csa05g01545 Csa-Chr5:18066483 Csa05g01553 Csa-Chr5:18148308 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01553 K17469 - csv:101211892 1245.72