Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01568 ATGGCCGTAAGCGGCGGAAGAGAGAAGGAGGAGGAAGCTGGAACCCACAGGCGGTCGGATTCAGATGGAGAAGTGGAATATAGGGTGGAGAGCGTTCGTGAACGGATCTCATCGTCGAGAGGGAGTCGATTCAATTTGATTCAGAGACAATTGAGGATTGATCAGAGTCGTAGAAGATTTAGCCGTGAAAATCTCATCAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGATGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGGTTCTTCAGGGGATTACCGGAGAATCTATTTATACTCGACATTGTTGGACAGATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAAACAGACATACCGAATGGTCTATAAACGCTCTCCAATAGCACTCAAGTACTTGAAATCCACTTTTGTGACTGATTTGCTCAGCTGTATGCCCTGGGATATCCTTTATAAGGCTTGTGGGAGGAGAGAGGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTTGATGCCTTTTTTAAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTAAAGCTACTTGTTGTTGAACTTTATTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCCGCTTCTGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTAGGGGACTATAGTTACTCACATTTCAGAGAGATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCCATTGTCACCATGGCCACTGTTGGTTATGGTGATGTACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTACGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGAAATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATACCAATATCAATCCGTGCTAAGATTTCCCAAACACTGTACTTGCCTTATGTTCAGAATGTTTCTCTCTTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTTTGCCTGGCGAGGTGATAATGGAACAAGGAAATGTGGTTGATCAACTTTATTTTGTCTGTCATGGTGTGCTGGAGGAATTAGGAATAGGACAAGATAGTTCAGAAGAGACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTGTGTAGACTCTTGCGAATTGATAAGCAGTCTTTTACAAATATCCTTGACATATACTTTTACGACGGGAGAAAAATCTTGAACAACCTTCTAGAGGGAAAAGAAACAAACCTTCGAGTTAAGCAATTGGAGTCGGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATCTATACCAATTAAAAGGTCTTGTTCGAGCTGGAGCTGATCCAAACAAGACTGATTATGACGGGAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTAGTTTTCCTTATTCAAGAAGGTGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTAATGGAAGCTATCAAGAATGGGAACGACCAAGTTGCTGTTTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGATAATCCTGGTAGTTTCCTCTGTACAGCAGTTTCAAGGGGCGATTCAGATCTTGTTAAGAGATTATTGTGCTATGGTATTGATCCCAACTCCAAAGATTATGATTCCCGAACTCCGCTACATATAGCTGTCTCAGAAGGGCTAACTTTGATGGCAAAGTTGCTTTTAGAATCTGGGGCTAGTGTTTTCTCAAAAGACAGATGGGGAAACACTCCGCTTGATGAAGGCCGAATTTGTGGAAACAAGAATATGCTTAAGCTCTTGGAAGAGGCAAAAGCTTCACAATTGTCAGAATCCCCTTATTCCTCTCGAGAATTTACAGACAAAAAACCCACCAAGAAATGTACGGTGTTTCCCTTCCACCCATGGGATCCTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTAACCATTGAAGAGCTCATCAAGGAATCATCAGAACAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATGTCCATATGATTGATGAATCTCAAAAGCTGTATCTAGTTCCTGATACTCATTAA 2487 40.57 MAVSGGREKEEEAGTHRRSDSDGEVEYRVESVRERISSSRGSRFNLIQRQLRIDQSRRRFSRENLINGIKCLVILPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDKQTYRMVYKRSPIALKYLKSTFVTDLLSCMPWDILYKACGRREEVRYLLWIRLFRVRKVDAFFKTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGYTWIGSLKLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDVHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSREIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLMEAIKNGNDQVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKRLLCYGIDPNSKDYDSRTPLHIAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEAKASQLSESPYSSREFTDKKPTKKCTVFPFHPWDPEENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPDTH* 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18341060 18352315 - CsaV3_5G023870.1 Csa05g01568 529955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01568 828 Gene3D - 83 328 - -
Csa05g01568 828 Gene3D - 645 740 IPR036770 -
Csa05g01568 828 SMART cnmp_10 402 520 IPR000595 -
Csa05g01568 828 Gene3D - 536 644 IPR036770 -
Csa05g01568 828 ProSiteProfiles Ankyrin repeat region circular profile. 676 708 - -
Csa05g01568 828 Pfam Cyclic nucleotide-binding domain 422 506 IPR000595 -
Csa05g01568 828 ProSiteProfiles Ankyrin repeat profile. 612 644 IPR002110 GO:0005515
Csa05g01568 828 ProSiteProfiles Ankyrin repeat profile. 579 611 IPR002110 GO:0005515
Csa05g01568 828 PANTHER POTASSIUM CHANNEL AKT1 7 827 IPR045319 GO:0005249|GO:0006813
Csa05g01568 828 Pfam Ion transport protein 82 327 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa05g01568 828 PRINTS Ankyrin repeat signature 580 595 IPR002110 GO:0005515
Csa05g01568 828 PRINTS Ankyrin repeat signature 692 706 IPR002110 GO:0005515
Csa05g01568 828 SUPERFAMILY Ankyrin repeat 551 731 IPR036770 -
Csa05g01568 828 ProSiteProfiles Ankyrin repeat region circular profile. 579 611 - -
Csa05g01568 828 PANTHER POTASSIUM CHANNEL SKOR-LIKE 7 827 - -
Csa05g01568 828 SUPERFAMILY cAMP-binding domain-like 330 520 IPR018490 -
Csa05g01568 828 CDD CAP_ED 402 516 IPR000595 -
Csa05g01568 828 ProSiteProfiles KHA domain profile. 755 828 IPR021789 -
Csa05g01568 828 ProSiteProfiles Ankyrin repeat profile. 676 708 IPR002110 GO:0005515
Csa05g01568 828 ProSiteProfiles cAMP/cGMP binding motif profile. 402 522 IPR000595 -
Csa05g01568 828 MobiDBLite consensus disorder prediction 1 25 - -
Csa05g01568 828 Gene3D Jelly Rolls 386 526 IPR014710 -
Csa05g01568 828 Gene3D Helix hairpin bin 329 385 - -
Csa05g01568 828 Pfam Ankyrin repeats (3 copies) 554 641 IPR002110 GO:0005515
Csa05g01568 828 Pfam Ankyrin repeats (3 copies) 649 730 IPR002110 GO:0005515
Csa05g01568 828 SUPERFAMILY Voltage-gated potassium channels 76 327 - -
Csa05g01568 828 ProSiteProfiles Ankyrin repeat region circular profile. 612 643 - -
Csa05g01568 828 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa05g01568 828 PRINTS EAG/ELK/ERG potassium channel family signature 226 236 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa05g01568 828 PRINTS EAG/ELK/ERG potassium channel family signature 274 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa05g01568 828 PRINTS EAG/ELK/ERG potassium channel family signature 318 327 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa05g01568 828 SMART ANK_2a 676 705 IPR002110 GO:0005515
Csa05g01568 828 SMART ANK_2a 643 672 IPR002110 GO:0005515
Csa05g01568 828 SMART ANK_2a 579 608 IPR002110 GO:0005515
Csa05g01568 828 SMART ANK_2a 709 738 IPR002110 GO:0005515
Csa05g01568 828 SMART ANK_2a 612 641 IPR002110 GO:0005515
Csa05g01568 828 Pfam KHA, dimerisation domain of potassium ion channel 754 823 IPR021789 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04376 Csa-Chr3:38197021 Csa05g01568 Csa-Chr5:18341060 4.23E-92 dispersed
Csa05g01568 Csa-Chr5:18341060 Csa05g01729 Csa-Chr5:20616624 1.39E-11 dispersed
Csa05g01568 Csa-Chr5:18341060 Csa01g02286 Csa-Chr1:20011245 7.31E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01568 K21867 - csv:101210912 1639.4