Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g01584 | ATGGCACTTGCAAATTCAGCTATACAAGAAGTTGATGGCATGGAGAAAAATGGCGGTGGATATTTGAAGAGTTTAGCCATTGGAAAAGGCCATGATCATCAGAATCCAAATGGTGACTTTGTGTTCCGAGACACCACGAATTATCAACTCGGTCAGCAGCAACAACAATCTCTCATCAACTTCGGTCATAAGATGAATAATGAGTCTTTGTTGAGCTTTGAAGCACAAGGGATTTGTCAATTAGATCTCACTTATAATTGGGATGATCAGCAACGTGTGATGGAAGACCCTAATTGCTTTCAGACAGCTACAAATCATAATAATTATAGTCCTTCAAAAGATCATCATCACCATAATAAAAATGGAGATAATGGTTCTGTTTATGAGTGGCTTTATTCTGAATCAACAACTGATTTTTCCGATTCCATTCAAGAAGCTGAAGGAACTCAAGAGATTGTTCCCAATCACAAGCGATCCCATACTACGGGAGAGAGCAGTGGGAGTGTATGTAAGAAGCAATGTACTGCTGCACCTAAGAAACAGAAACCCAAATCAGCAACAGCCAAAGATCCACAAAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGTTGAAGATACTCCAAGAATTGGTTCCCAATGGCTCTAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTAAAATTTCTTCAACTACAAGTGAAGATCCTAGCAACCGATGAATTTTGGCCAGTTCAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGCTCAAACAGTGAAAAGTGA | 855 | 39.65 | MALANSAIQEVDGMEKNGGGYLKSLAIGKGHDHQNPNGDFVFRDTTNYQLGQQQQQSLINFGHKMNNESLLSFEAQGICQLDLTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHHHNKNGDNGSVYEWLYSESTTDFSDSIQEAEGTQEIVPNHKRSHTTGESSGSVCKKQCTAAPKKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDVILSSQRERSSSSNSEK* | 285 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 18711066 | 18713891 | + | CsaV3_5G024030.1 | Csa05g01584 | 529971 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g01584 | 284 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 32 | 272 | - | - | |
| Csa05g01584 | 284 | Pfam | Helix-loop-helix DNA-binding domain | 194 | 237 | IPR011598 | GO:0046983 | |
| Csa05g01584 | 284 | SMART | finulus | 193 | 242 | IPR011598 | GO:0046983 | |
| Csa05g01584 | 284 | MobiDBLite | consensus disorder prediction | 149 | 198 | - | - | |
| Csa05g01584 | 284 | CDD | bHLH_AtIND_like | 188 | 250 | - | - | |
| Csa05g01584 | 284 | Gene3D | - | 180 | 244 | IPR036638 | GO:0046983 | |
| Csa05g01584 | 284 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 187 | 245 | IPR036638 | GO:0046983 | |
| Csa05g01584 | 284 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 187 | 236 | IPR011598 | GO:0046983 | |
| Csa05g01584 | 284 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 32 | 272 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g01899 | Csa-Chr2:17969523 | Csa05g01584 | Csa-Chr5:18711066 | 6.15E-26 | dispersed | |
| Csa04g00038 | Csa-Chr4:228607 | Csa05g01584 | Csa-Chr5:18711066 | 3.68E-25 | dispersed | |
| Csa05g01584 | Csa-Chr5:18711066 | Csa07g00687 | Csa-Chr7:4913547 | 3.04E-26 | dispersed | |
| Csa05g01584 | Csa-Chr5:18711066 | Csa04g02472 | Csa-Chr4:24696914 | 6.18E-27 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31756 | PF00010 | HLH | 9.00E-08 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g01584 | - | - | csv:101209438 | 526.554 |