Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01594 ATGAAGCGGGAGCTTGAAGATGATAGATCTACTACCCCTGGGGATGCCCCGAGGATTGTGAAGGGAGATTCTTCTTCAATGTCGTCTGGAAAACTCAAGATGTGGCAGCCCCATGAGGAGGACGAGGGGAAGGATGCCAAAGACGGCGCCGCCGGTGGAATGGATGAGTTGCTTGCTGTTTTGGGTTACAAGGTTCGCTCCTCAGATATGGCGGATGTGGCTTTGAAGTTGGAGCAGCTTGAGATGGTCATGGGAACTGCTTACGAACATGGGATTTCTCATCTCGCTTCCGATACTGTTCATTATAATCCTTCTGATCTCTCTTCTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTCCACTAACCATTTTAATCCTCCCCCTCAATCTTCTCCCTATTCCAATTCTCCCCACCCCATTCAATCTACCAAATCTTGTTTCTACGACGATGATTCGGAGTACGATCTTAGTGCCATTCCTGGCGTTGCGGTTTTACCTCCTAAAGATGAAACCCAAACTAATTCTCGTAAGCGATTGAAGATTGAAACACAGAGTAGTTCGGTTAATTTGCTACCATCGCCGTCCTCCTCTTCGCCACCGTTCGCTTCTACGCCGAGGATTGCCTCTGAATCTTCGCGGCCGGTGATAGTTGTGGAAGAGGATTCACAAGAGACTGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCTGTACAGCAAGAGAATATGAAGCTCGCCGATGCGTTGGTGAAGCACATCGGATTTCTTGCAACGTCTCAAGCCGGCGCTATGAGGAAAGTCGCCACGTATTTCGCTCAAGCCCTAGCTCGTCGGATTTACAGAATCTATTCTCCTCAGGATGGACTATACTCCTCCTACTCCGATCCTCTTCAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCCAATCAAGCCATTCTTGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTTAATCAAGGTATGCAATGGCCGGCGCTTATGCAGGCACTCGCGTTGCGGCCTGGAGGTCCACCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCGGAAAATGCAGCGGGTTCGTTGCAGCAAGTCGGTTGGAAGTTAGCGCAGATGGCAGAGGCCATTGGTGTTGATTTCGAGTTCAATCACATCGTGTGTAGTAATCTAGCGGATCTGGATCCGGCGGCTCTTGAGATTCGACCGTCGGCAGTGGAGGCGGTGGCGGTAAACTCGGTGTTCGATCTGCACCGGTTGTTGGCTCGGCCTGGAGCGATTGAGAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATAGTAACGATTGTGGAACAAGAAGCGAACCACAACGGTCCGATTTTCCTGGACCGGTTTACTGAGGCGTTGCATTATTACTCGAATCTGTTTGACTCGTTGGAAGGGTCTTCGAGCGGGTTCGAACCGGGAAGTGAGGACGTGTTGTTGTCGGAGGTTTATTTAGGAAAGCAGATATGCAACGTGGTGGCTTGTGAAGGAACGAACCGAGTTGAGAGGCACGAATCACTAAGTCAGTGGCGAAGTAGGATGGAGTCGTCCGGGTTCGATCCGGTCCATCTGGGTTCAAACGCGTTTAAACAAGCTAGTATGCTTTTGGCCCTCTTTGCAGGAGGAGAAGGGTACAGGGTGGAAGAGAATAATGGGTGTTTAATGCTTGGCTGGCACACTAGACCGTTGATCGCCACGTCCGCATGGCAACTCGCTCCTGATGAGTCGAAGTGA 1812 50.44 MKRELEDDRSTTPGDAPRIVKGDSSSMSSGKLKMWQPHEEDEGKDAKDGAAGGMDELLAVLGYKVRSSDMADVALKLEQLEMVMGTAYEHGISHLASDTVHYNPSDLSSWVQNMLSEFNNSTNHFNPPPQSSPYSNSPHPIQSTKSCFYDDDSEYDLSAIPGVAVLPPKDETQTNSRKRLKIETQSSSVNLLPSPSSSSPPFASTPRIASESSRPVIVVEEDSQETGIQLVHALMACAEAVQQENMKLADALVKHIGFLATSQAGAMRKVATYFAQALARRIYRIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPENAAGSLQQVGWKLAQMAEAIGVDFEFNHIVCSNLADLDPAALEIRPSAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPIFLDRFTEALHYYSNLFDSLEGSSSGFEPGSEDVLLSEVYLGKQICNVVACEGTNRVERHESLSQWRSRMESSGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAPDESK* 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18792392 18795265 - CsaV3_5G024130.1 Csa05g01594 529981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01594 603 Pfam Transcriptional regulator DELLA protein N terminal 55 122 IPR021914 -
Csa05g01594 603 Gene3D - 53 118 IPR038088 -
Csa05g01594 603 MobiDBLite consensus disorder prediction 34 50 - -
Csa05g01594 603 MobiDBLite consensus disorder prediction 179 209 - -
Csa05g01594 603 ProSiteProfiles GRAS family profile. 221 596 IPR005202 -
Csa05g01594 603 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 596 IPR005202 -
Csa05g01594 603 MobiDBLite consensus disorder prediction 121 145 - -
Csa05g01594 603 MobiDBLite consensus disorder prediction 162 209 - -
Csa05g01594 603 Pfam GRAS domain family 230 596 IPR005202 -
Csa05g01594 603 PANTHER DELLA PROTEIN RGL1 48 596 IPR030006 GO:0003712|GO:0005634
Csa05g01594 603 SMART DELLA_2 55 128 - -
Csa05g01594 603 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02578 Csa-Chr2:22508174 Csa05g01594 Csa-Chr5:18792392 1.19E-103 dispersed
Csa03g02085 Csa-Chr3:17145897 Csa05g01594 Csa-Chr5:18792392 0 dispersed
Csa05g01594 Csa-Chr5:18792392 Csa05g02016 Csa-Chr5:23548902 0 dispersed
Csa07g01910 Csa-Chr7:18972229 Csa05g01594 Csa-Chr5:18792392 7.02E-48 dispersed
Csa05g01594 Csa-Chr5:18792392 Csa06g00941 Csa-Chr6:7561913 3.86E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31757 PF03514 GRAS 5.80E-134 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01594 K14494 - csv:101213911 1148.65