Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01619 ATGGCCCGCCGGAATATCCACCGGCACTATTTTTCATCCGTGCTGTTTCTTGTTTTGATCATTTGTTCTGTAGCAGAAGCAGAGCTTGATCTTGCCTTCGACATGGCGGCGCTTGTGGCGCTTCAGAAGGCCATGGGTGTTTTGAGCCGGACTCGCTATTGGAACCTCTCTGATAATAATCCATGTTTATGGCTTGGTGTTACTTGCAGCGGCGGGAGGGTTACTGAACTGCGGCTTCCTGGCGTTGGTCTTGTCGGGCAACTTCCGTTAGGGCTTGGAAATTTGACTCAACTTCAAACGCTATCTCTTCGTTCTAACATGCTTTCAGGTTCTATTCCCTCTGATTTTGCAAACCTCCGCTCCCTCCGGAATTTGTACTTGCAATGGAACTCATTTTCCGGCGAGATTCCTCCGATTCTGTTCAGTATTCGTAGTATTGTTCGTCTGAATTTGGCCCACAACAAGTTTGTTGAGTCGATTCCATTAGGTTTCAATAATCTCACGAACTTACAGGTTCTCAATTTGGAAGAGAATCAACTCGAGGGATTTATTCCTGATTTGAACATTCCCTCACTCAACGCTCTCAATGTTTCTTTCAATCGTCTCAACGGCTCAATCCCTTCTCAATTTTCCAATCAACCAGCCAGTGCCTTCAACGGCAACTCCCTCTGCGAGAAGCCGCTGAGCCCTTGCGATGGTGGCGGGAAGAAAAAATTATCTGCTGGAGTTATCGCCGGTATTGTCATTGGAAGTTTGATTGCATTCTTGATCATTATTCTGATTTTGTTCTATTTGTGTCGAAGGGCGATTAGGATTAATCAGCCGAATGATGCTCAGACGACGGTGACAACCTCAGGGAGATTGTCGTCGGAGGTCGAGACTGTGGTGGGGGAAAATAGAGGAGGTGGGAATGAGAGGGCTTTGGTATTCTGTAGGAAAGGAGAAGTGGTGTTTGACTTGGAAGAACTGTTGAAAGCTTCTGCAGAGGTGTTGGGGAAAGGGAGTTTTGGGTCAACTTATACGGCAGCTTTGGATGTGGGGATAACTGTGGTGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAAGAGGAGTTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCCAAACTTAGTTCCTATTAAGGGTTTCTATTATGGCAGAGATGAGAAGCTTCTGCTTTCTGATCATATCTCGTCCATGGGAAGCTTATCTGTACATTTACATGGCAACAAAGATCCTAGTAGGACTTCATTAAAATGGGAAGCAAGGGCTGGCATTGCGCTTGCTGCCGCTCAGGGGATCACGTATCTACATTCTCGACGACCTCCAATCTCTCATGGCAATATAAAGTCTTCAAACATTCTCCTCAACAGGTCCCATACAGCTTGTGTCTCTGACTTCGGTCTCATTCAGATTGCAAGTCCTGCATCCACACCAAACCATGTTGCAACCTACCGTGCCCCCGAAGTCACTGATCCTCGAAAAGTGTCCCTTAAAGCAGATGTTTACAGTTTTGGTGTAGTAGTTCTAGAGCTCTTAACAGGGAAGGCTCCAAACTCGGCAATGTTCAACGACGATGCCGTAGACCTACCACGATGGGTGCATTCGAAAGTCAAGGAGAAGAAGACTGCTGAAGTGTTTGACGAGGAGCTGTTAGAATACAAGAATGGCTTGGATGAAATGGTTCAACTTCTGCATCTTGCCATGTTATGTACAGCGCCACACCCGGATAGTCGACCTTCAATGGCAAAAGTGACAAGTCGGATTGACGAAATATATCATTTGATTTTACTTAAAGAACAAGAGATGAGCAATGACAAGTTTTATGATGTTGAGAGTACTGTTTCTCAGCAGTTTTACTCGGCTGATTCAATCATGGTTCCTCTTCCACCTTCAATCTAG 1911 45.47 MARRNIHRHYFSSVLFLVLIICSVAEAELDLAFDMAALVALQKAMGVLSRTRYWNLSDNNPCLWLGVTCSGGRVTELRLPGVGLVGQLPLGLGNLTQLQTLSLRSNMLSGSIPSDFANLRSLRNLYLQWNSFSGEIPPILFSIRSIVRLNLAHNKFVESIPLGFNNLTNLQVLNLEENQLEGFIPDLNIPSLNALNVSFNRLNGSIPSQFSNQPASAFNGNSLCEKPLSPCDGGGKKKLSAGVIAGIVIGSLIAFLIIILILFYLCRRAIRINQPNDAQTTVTTSGRLSSEVETVVGENRGGGNERALVFCRKGEVVFDLEELLKASAEVLGKGSFGSTYTAALDVGITVVVKRLRDVKVSEEEFKEKIESLGMMNHPNLVPIKGFYYGRDEKLLLSDHISSMGSLSVHLHGNKDPSRTSLKWEARAGIALAAAQGITYLHSRRPPISHGNIKSSNILLNRSHTACVSDFGLIQIASPASTPNHVATYRAPEVTDPRKVSLKADVYSFGVVVLELLTGKAPNSAMFNDDAVDLPRWVHSKVKEKKTAEVFDEELLEYKNGLDEMVQLLHLAMLCTAPHPDSRPSMAKVTSRIDEIYHLILLKEQEMSNDKFYDVESTVSQQFYSADSIMVPLPPSI* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19188784 19192210 - CsaV3_5G024380.1 Csa05g01619 530006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01619 636 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Csa05g01619 636 Gene3D Ribonuclease Inhibitor 145 231 IPR032675 -
Csa05g01619 636 PANTHER OS05G0588300 PROTEIN 11 596 - -
Csa05g01619 636 Gene3D Phosphorylase Kinase; domain 1 294 399 - -
Csa05g01619 636 Gene3D Ribonuclease Inhibitor 34 143 IPR032675 -
Csa05g01619 636 SUPERFAMILY Protein kinase-like (PK-like) 329 590 IPR011009 -
Csa05g01619 636 SUPERFAMILY L domain-like 42 212 - -
Csa05g01619 636 Gene3D Transferase(Phosphotransferase) domain 1 402 605 - -
Csa05g01619 636 Pfam Leucine rich repeat 93 131 IPR001611 GO:0005515
Csa05g01619 636 PANTHER LRR RECEPTOR-LIKE KINASE 11 596 - -
Csa05g01619 636 SMART LRR_typ_2 167 190 IPR003591 -
Csa05g01619 636 SMART LRR_typ_2 119 143 IPR003591 -
Csa05g01619 636 SMART LRR_typ_2 95 118 IPR003591 -
Csa05g01619 636 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Csa05g01619 636 ProSiteProfiles Protein kinase domain profile. 325 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01619 636 Pfam Protein tyrosine and serine/threonine kinase 329 591 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02101 Csa-Chr3:17491006 Csa05g01619 Csa-Chr5:19188784 0 dispersed
Csa05g01619 Csa-Chr5:19188784 Csa01g02093 Csa-Chr1:18117705 6.42E-151 dispersed
Csa05g01619 Csa-Chr5:19188784 Csa01g00727 Csa-Chr1:4605115 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78250 PF07714 PK_Tyr_Ser-Thr 2.30E-32 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01619 - - csv:101206516 1174.84