Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01620 ATGGACAACAACAACCAACCTGAGAATCAACCCTCCGATGCCCCCAAATTGGATTCTGATCATGCCACCAATCTCCCTCATCAAACCGATGCCCCTGCTGTAAAATCTGACGAAAATTCGAAAGATCAAGATCACGATCACAATAAGAATCAGGATCAGGATCAGGAGAACAAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAGGAGGATGAAGAAGAAGAAAGGACGAATGGAGATGAAAAGAAGGAAGAGGAGGAAGAGTCCAAGGATGAACCAGATCTTCATTACAATCTCAATACGATTCTTGAAGATGTCGATCAATTTCTCTCAACGCCTCACGGTTCTCGTGATCGAGAGGAAGATTCTGCTGTTGACATTCCCAAGTTCATCGACAAATTCTTGGATCTCGTGGATGCCAAGATTGAGCAATACAATAACGAGGAACCCAATGCAAAGCAGAGAGAATGTCGAGTGCCGGAGGATGAGTCAACGTTTCTCGAAGCGATTGATAGGATATCGAAGCTAAAAAATGCAATTCACGAGATGAAATTGGAAGAGGAGAAGAATTCATTGATCAATCGCATCGGAAGCACTCAACAGCAAGCGATTTCTTATTTGGAAGAAGAGTTCAGATTCTTTCTGGAGGAATCTAGAAATAGCGATTCTGATCCTGCTACTGATACAAAAGGTAAACAAGAACAGGATCGTTGTGCATTTCCTGAGGCTGAATCCGACCAGCTCCAGTTTCCAGGTTACTCCAAGGAGATCGTCAACTATTTGAACAAAATCGCTAAGCGAATGATTTCCGGTGGGTACGAATCGGAATGCTGCCAAGTGTACATGGTTGCGAGAAGAAACATAATCGAAGATGCCTTACTGAAGCTCGGATTTGAAAAACACAGCATCGATGATATCCAGAAGATGAATTGGGAATCAATGGAGAGGGAGATCGCTACATGGATTAAAACGATCAAGCAATGCGCCACCATTTTGTTCTCTGGCGAACAGAATCTCACCGAATCTGTATTTTCATCATATCCTCCGATTTCCGCCAGTCTGTTTAGCAATCTTACACGCGGCATTGTGATTCAACTGCTAAATTTCTCAGAAGGAGTCGCAATGACAAAACGCTCCGCAGAGAAATTGTTCAAACTCCTTGATATGTACGAAGCTCTTCGCGATATGGTTCCAAAAATGGAAACATTATTTCCAGAAGAATCCGCGAACGAGCTCAAAACAGAGACCACAACCGCTCGAACTCGTCTAGGCGAAGCAGCGATTTGCATATTTTGCGATCTCGAAAACTCAATCAAAGCAGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTTCATCCATTAACTCGATACACCATTAACTACTTGAAGTACGCTTGCGAGTACAGGAACACACTGGAACAAATTTTCAAAGAACATTCAAAGATCGAAAGAGCCGATTCCACAAGCCGACCACATTTCGAAGGTGAACAAGCACCGAATTACAACCCAAGCGCTGACAATCAATCACCATTCTCGGTAGAACTGATGCGTGTGATGGAGCTATTGGATTCAAATCTGGAAGCAAAATCAAAGCTATACAGAGACATAGCACTGAGTTCGATCTTCATGATGAACAACGGACGATACATCTTACAGAAAATCAAAGGATCTGCAGATATCCACGAACTAGTGGGTGATTCATGGTACAGGAAGAGATCTTCAGATCTACGCCAATACCACAAAAATTACCAGAGGGAAACATGGGGTAAATTGTTAGGTTGTTTGAACCACGAAGGATTAACAGTACACGGGAAAGTGGTAAAGCCAGTGCTGAAAGAAAGGTTTAAAGGATTCAACGCATTGTTCGAAGAGATTCACAAAACACAAAGCTCATGGATCATAAGCGACGAACAACTTCAATCGGAGCTGCGAGTATCGATATCGGCGGTGATGATTCCGGCGTATAGATCATTTTTAGCTAGGTTTTCACAGTATTTGGATCCAGGGAGACAAACAGAGAAATACATAAAGTTCCAACCTGAAGATATAGAGACATACATAGATGATTTGTTTGATGGAAATCCAAGCTCCATGGCAAGAAGGAGAACATAA 2115 43.03 MDNNNQPENQPSDAPKLDSDHATNLPHQTDAPAVKSDENSKDQDHDHNKNQDQDQENKEEEEEEKKKKKEDEEEERTNGDEKKEEEEESKDEPDLHYNLNTILEDVDQFLSTPHGSRDREEDSAVDIPKFIDKFLDLVDAKIEQYNNEEPNAKQRECRVPEDESTFLEAIDRISKLKNAIHEMKLEEEKNSLINRIGSTQQQAISYLEEEFRFFLEESRNSDSDPATDTKGKQEQDRCAFPEAESDQLQFPGYSKEIVNYLNKIAKRMISGGYESECCQVYMVARRNIIEDALLKLGFEKHSIDDIQKMNWESMEREIATWIKTIKQCATILFSGEQNLTESVFSSYPPISASLFSNLTRGIVIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMETLFPEESANELKTETTTARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHSKIERADSTSRPHFEGEQAPNYNPSADNQSPFSVELMRVMELLDSNLEAKSKLYRDIALSSIFMMNNGRYILQKIKGSADIHELVGDSWYRKRSSDLRQYHKNYQRETWGKLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQTEKYIKFQPEDIETYIDDLFDGNPSSMARRRT* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19199254 19202387 - CsaV3_5G024390.1 Csa05g01620 530007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01620 704 MobiDBLite consensus disorder prediction 34 76 - -
Csa05g01620 704 Pfam Exo70 exocyst complex subunit 320 690 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa05g01620 704 MobiDBLite consensus disorder prediction 487 507 - -
Csa05g01620 704 MobiDBLite consensus disorder prediction 1 30 - -
Csa05g01620 704 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 82 703 - -
Csa05g01620 704 PANTHER EXOCYST COMPLEX PROTEIN EXO70 82 703 IPR004140 GO:0000145|GO:0006887
Csa05g01620 704 Coils Coil 182 202 - -
Csa05g01620 704 MobiDBLite consensus disorder prediction 218 237 - -
Csa05g01620 704 Gene3D Exocyst complex component Exo70 142 702 - -
Csa05g01620 704 SUPERFAMILY Cullin repeat-like 160 693 IPR016159 -
Csa05g01620 704 Coils Coil 48 89 - -
Csa05g01620 704 MobiDBLite consensus disorder prediction 1 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02542 Csa-Chr1:22413699 Csa05g01620 Csa-Chr5:19199254 4.46E-128 dispersed
Csa04g00293 Csa-Chr4:1818166 Csa05g01620 Csa-Chr5:19199254 0 dispersed
Csa05g01620 Csa-Chr5:19199254 Csa05g02705 Csa-Chr5:27858578 2.54E-105 dispersed
Csa05g01620 Csa-Chr5:19199254 Csa01g02355 Csa-Chr1:20716420 6.13E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01620 K07195 - csv:101206040 1298.11