Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01620 ATGGACAACAACAACCAACCTGAGAATCAACCCTCCGATGCCCCCAAATTGGATTCTGATCATGCCACCAATCTCCCTCATCAAACCGATGCCCCTGCTGTAAAATCTGACGAAAATTCGAAAGATCAAGATCACGATCACAATAAGAATCAGGATCAGGATCAGGAGAACAAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAGGAGGATGAAGAAGAAGAAAGGACGAATGGAGATGAAAAGAAGGAAGAGGAGGAAGAGTCCAAGGATGAACCAGATCTTCATTACAATCTCAATACGATTCTTGAAGATGTCGATCAATTTCTCTCAACGCCTCACGGTTCTCGTGATCGAGAGGAAGATTCTGCTGTTGACATTCCCAAGTTCATCGACAAATTCTTGGATCTCGTGGATGCCAAGATTGAGCAATACAATAACGAGGAACCCAATGCAAAGCAGAGAGAATGTCGAGTGCCGGAGGATGAGTCAACGTTTCTCGAAGCGATTGATAGGATATCGAAGCTAAAAAATGCAATTCACGAGATGAAATTGGAAGAGGAGAAGAATTCATTGATCAATCGCATCGGAAGCACTCAACAGCAAGCGATTTCTTATTTGGAAGAAGAGTTCAGATTCTTTCTGGAGGAATCTAGAAATAGCGATTCTGATCCTGCTACTGATACAAAAGGTAAACAAGAACAGGATCGTTGTGCATTTCCTGAGGCTGAATCCGACCAGCTCCAGTTTCCAGGTTACTCCAAGGAGATCGTCAACTATTTGAACAAAATCGCTAAGCGAATGATTTCCGGTGGGTACGAATCGGAATGCTGCCAAGTGTACATGGTTGCGAGAAGAAACATAATCGAAGATGCCTTACTGAAGCTCGGATTTGAAAAACACAGCATCGATGATATCCAGAAGATGAATTGGGAATCAATGGAGAGGGAGATCGCTACATGGATTAAAACGATCAAGCAATGCGCCACCATTTTGTTCTCTGGCGAACAGAATCTCACCGAATCTGTATTTTCATCATATCCTCCGATTTCCGCCAGTCTGTTTAGCAATCTTACACGCGGCATTGTGATTCAACTGCTAAATTTCTCAGAAGGAGTCGCAATGACAAAACGCTCCGCAGAGAAATTGTTCAAACTCCTTGATATGTACGAAGCTCTTCGCGATATGGTTCCAAAAATGGAAACATTATTTCCAGAAGAATCCGCGAACGAGCTCAAAACAGAGACCACAACCGCTCGAACTCGTCTAGGCGAAGCAGCGATTTGCATATTTTGCGATCTCGAAAACTCAATCAAAGCAGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTTCATCCATTAACTCGATACACCATTAACTACTTGAAGTACGCTTGCGAGTACAGGAACACACTGGAACAAATTTTCAAAGAACATTCAAAGATCGAAAGAGCCGATTCCACAAGCCGACCACATTTCGAAGGTGAACAAGCACCGAATTACAACCCAAGCGCTGACAATCAATCACCATTCTCGGTAGAACTGATGCGTGTGATGGAGCTATTGGATTCAAATCTGGAAGCAAAATCAAAGCTATACAGAGACATAGCACTGAGTTCGATCTTCATGATGAACAACGGACGATACATCTTACAGAAAATCAAAGGATCTGCAGATATCCACGAACTAGTGGGTGATTCATGGTACAGGAAGAGATCTTCAGATCTACGCCAATACCACAAAAATTACCAGAGGGAAACATGGGGTAAATTGTTAGGTTGTTTGAACCACGAAGGATTAACAGTACACGGGAAAGTGGTAAAGCCAGTGCTGAAAGAAAGGTTTAAAGGATTCAACGCATTGTTCGAAGAGATTCACAAAACACAAAGCTCATGGATCATAAGCGACGAACAACTTCAATCGGAGCTGCGAGTATCGATATCGGCGGTGATGATTCCGGCGTATAGATCATTTTTAGCTAGGTTTTCACAGTATTTGGATCCAGGGAGACAAACAGAGAAATACATAAAGTTCCAACCTGAAGATATAGAGACATACATAGATGATTTGTTTGATGGAAATCCAAGCTCCATGGCAAGAAGGAGAACATAA 2115 43.03 MDNNNQPENQPSDAPKLDSDHATNLPHQTDAPAVKSDENSKDQDHDHNKNQDQDQENKEEEEEEKKKKKEDEEEERTNGDEKKEEEEESKDEPDLHYNLNTILEDVDQFLSTPHGSRDREEDSAVDIPKFIDKFLDLVDAKIEQYNNEEPNAKQRECRVPEDESTFLEAIDRISKLKNAIHEMKLEEEKNSLINRIGSTQQQAISYLEEEFRFFLEESRNSDSDPATDTKGKQEQDRCAFPEAESDQLQFPGYSKEIVNYLNKIAKRMISGGYESECCQVYMVARRNIIEDALLKLGFEKHSIDDIQKMNWESMEREIATWIKTIKQCATILFSGEQNLTESVFSSYPPISASLFSNLTRGIVIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMETLFPEESANELKTETTTARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHSKIERADSTSRPHFEGEQAPNYNPSADNQSPFSVELMRVMELLDSNLEAKSKLYRDIALSSIFMMNNGRYILQKIKGSADIHELVGDSWYRKRSSDLRQYHKNYQRETWGKLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQTEKYIKFQPEDIETYIDDLFDGNPSSMARRRT* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19199254 19202387 - CsaV3_5G024390.1 Csa05g01620 530007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01620 704 MobiDBLite consensus disorder prediction 34 76 - -
Csa05g01620 704 Pfam Exo70 exocyst complex subunit 320 690 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa05g01620 704 MobiDBLite consensus disorder prediction 487 507 - -
Csa05g01620 704 MobiDBLite consensus disorder prediction 1 30 - -
Csa05g01620 704 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 82 703 - -
Csa05g01620 704 PANTHER EXOCYST COMPLEX PROTEIN EXO70 82 703 IPR004140 GO:0000145|GO:0006887
Csa05g01620 704 Coils Coil 182 202 - -
Csa05g01620 704 MobiDBLite consensus disorder prediction 218 237 - -
Csa05g01620 704 Gene3D Exocyst complex component Exo70 142 702 - -
Csa05g01620 704 SUPERFAMILY Cullin repeat-like 160 693 IPR016159 -
Csa05g01620 704 Coils Coil 48 89 - -
Csa05g01620 704 MobiDBLite consensus disorder prediction 1 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01620 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101206040 1298.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02542 Csa-Chr1:22413699 Csa05g01620 Csa-Chr5:19199254 4.46E-128 dispersed
Csa04g00293 Csa-Chr4:1818166 Csa05g01620 Csa-Chr5:19199254 0 dispersed
Csa05g01620 Csa-Chr5:19199254 Csa05g02705 Csa-Chr5:27858578 2.54E-105 dispersed
Csa05g01620 Csa-Chr5:19199254 Csa01g02355 Csa-Chr1:20716420 6.13E-80 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02705 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G03540 70.7 6.0e-265 910.2
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G03540 68.9 8.8e-168 587.4
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G03540 74.7 5.3e-72 269.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G52340 79.8 1.9e-297 1018.1
Csa05g02705 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G52340 77.9 2.8e-187 652.1
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52340 80.2 7.8e-81 298.5
Csa06g02721 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.7e-175 612.8
Csa05g02705 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Csa06g02723 . 145 421 EXO70 exocyst subunit family AT5G52350 60.1 1.2e-88 324.3
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52350 64.3 2.0e-62 237.3
Csa01g02542 . 1 630 EXO70 exocyst subunit family AT5G58430 66.5 7.6e-246 846.7
Csa01g02542 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.3e-175 612.5
Csa04g00293 . 60 673 EXO70 exocyst subunit family AT5G13150 52.6 3.1e-173 605.5
Csa05g01620 . 93 705 EXO70 exocyst subunit family AT5G13990 54.3 4.1e-192 668.3
Csa03g02774 . 12 611 EXO70 exocyst subunit family AT1G72470 64.3 1.3e-213 739.6
Csa03g02774 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 3.9e-210 728.0
Csa03g02774 . 9 608 EXO70 exocyst subunit family AT3G14090 65.1 8.4e-221 763.5
Csa01g03408 . 14 651 EXO70 exocyst subunit family AT5G50380 61.9 5.6e-226 780.8
Csa01g00963 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 3.1e-224 775.0
Csa02g02314 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 4.5e-292 1000.3
Csa05g00661 . 58 601 EXO70 exocyst subunit family AT3G55150 51.7 2.2e-152 536.2
Csa05g00661 . 27 601 EXO70 exocyst subunit family AT2G39380 52.0 3.9e-157 552.0
Csa03g03213 . 27 632 EXO70 exocyst subunit family AT3G09520 54.3 4.0e-178 621.7
Csa06g01715 . 36 613 EXO70 exocyst subunit family AT5G59730 50.2 5.9e-153 538.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011360 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 0 31