Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01629 ATGGTTGTTGCTGTTGAATCCACCCCTTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGCAAATTGATCGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCTGTTGATTCTGGAACTAAGGCCTTGGAATTTCTCGGTCTTGTTCAACATCACGATCAGCAAACGGACTCCAAAATCGCTCCTGATCAGAACCATCATCATCAAGAAGTGGATGTAAATTTAATCATCACGGATTACAGCATGCCTGGAATGAGTGGCTACGAACTCCTTAGAAAAATCAAGGAATCGAAATCTCTTAAAGACATACCGGTTGTGATTATGTCATCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCTGAAGAATTCTTCCTCAAACCAGTTCAATTATCTGATGTCAGGAAATTGAGACCTCATTTGATTAAAGAAAAATCCACAAACAATTGA 471 40.13 MVVAVESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQHHDQQTDSKIAPDQNHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN* 157
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 19338596 19340126 + CsaV3_5G024480.1 Csa05g01629 530016
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01629 156 ProSiteProfiles Response regulatory domain profile. 11 149 IPR001789 GO:0000160
Csa05g01629 156 CDD REC_typeA_ARR 12 144 - -
Csa05g01629 156 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 154 IPR045279 GO:0009736
Csa05g01629 156 SMART REC_2 10 145 IPR001789 GO:0000160
Csa05g01629 156 Gene3D - 11 155 - -
Csa05g01629 156 SUPERFAMILY CheY-like 9 144 IPR011006 -
Csa05g01629 156 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 3 154 - -
Csa05g01629 156 Pfam Response regulator receiver domain 12 143 IPR001789 GO:0000160
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01951 Csa-Chr4:19429525 Csa05g01629 Csa-Chr5:19338596 1.87E-71 dispersed
Csa05g00905 Csa-Chr5:7009852 Csa05g01629 Csa-Chr5:19338596 4.64E-57 dispersed
Csa05g01629 Csa-Chr5:19338596 Csa05g02855 Csa-Chr5:28884165 1.74E-69 dispersed
Csa05g01629 Csa-Chr5:19338596 Csa05g02375 Csa-Chr5:25975705 5.33E-56 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31760 PF00072 Response_reg 6.30E-21 CL0304 Csa TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01629 K14492 - csv:101210839 310.071