Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01629 | ATGGTTGTTGCTGTTGAATCCACCCCTTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGCAAATTGATCGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCTGTTGATTCTGGAACTAAGGCCTTGGAATTTCTCGGTCTTGTTCAACATCACGATCAGCAAACGGACTCCAAAATCGCTCCTGATCAGAACCATCATCATCAAGAAGTGGATGTAAATTTAATCATCACGGATTACAGCATGCCTGGAATGAGTGGCTACGAACTCCTTAGAAAAATCAAGGAATCGAAATCTCTTAAAGACATACCGGTTGTGATTATGTCATCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCTGAAGAATTCTTCCTCAAACCAGTTCAATTATCTGATGTCAGGAAATTGAGACCTCATTTGATTAAAGAAAAATCCACAAACAATTGA | 471 | 40.13 | MVVAVESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQHHDQQTDSKIAPDQNHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN* | 157 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19338596 | 19340126 | + | CsaV3_5G024480.1 | Csa05g01629 | 530016 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01629 | 156 | ProSiteProfiles | Response regulatory domain profile. | 11 | 149 | IPR001789 | GO:0000160 | |
Csa05g01629 | 156 | CDD | REC_typeA_ARR | 12 | 144 | - | - | |
Csa05g01629 | 156 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 3 | 154 | IPR045279 | GO:0009736 | |
Csa05g01629 | 156 | SMART | REC_2 | 10 | 145 | IPR001789 | GO:0000160 | |
Csa05g01629 | 156 | Gene3D | - | 11 | 155 | - | - | |
Csa05g01629 | 156 | SUPERFAMILY | CheY-like | 9 | 144 | IPR011006 | - | |
Csa05g01629 | 156 | PANTHER | RESPONSE REGULATOR ARR8, PUTATIVE-RELATED | 3 | 154 | - | - | |
Csa05g01629 | 156 | Pfam | Response regulator receiver domain | 12 | 143 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01951 | Csa-Chr4:19429525 | Csa05g01629 | Csa-Chr5:19338596 | 1.87E-71 | dispersed | |
Csa05g00905 | Csa-Chr5:7009852 | Csa05g01629 | Csa-Chr5:19338596 | 4.64E-57 | dispersed | |
Csa05g01629 | Csa-Chr5:19338596 | Csa05g02855 | Csa-Chr5:28884165 | 1.74E-69 | dispersed | |
Csa05g01629 | Csa-Chr5:19338596 | Csa05g02375 | Csa-Chr5:25975705 | 5.33E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31760 | PF00072 | Response_reg | 6.30E-21 | CL0304 | Csa | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01629 | K14492 | - | csv:101210839 | 310.071 |