Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01660 ATGCCAGACGTGCAAGCCATTGTGAATGATTTCGTTATCAAGCTTATGAAGCGGAAAATTGAGGGTTCCTTGGCCACAGCGAAGCATACGGCTGAATTGCTTCGTTCTGTCATTTCGGCGCAGCGAATACCCTACACGAATCAGGCGGCTGCTTTGATTGATGCTGTTAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGAGCTTGCTGTGGGCAATATTGTGAGGCGTGTTTTGCACATTATTAGGGAGGAGGATCTCTCTCTCACCACAGCTTCTATTGCTGGGTTAAGCTTATCAGCAGTTAGTGATGATGAAGATGACATTGAAAAAGATGATCGCCCTGTCCTCTCAGCTGCTGCTGTTGCTGCTGCTGCAAGAAGCACTTTGCGGCCACCTTCCTTGCAAACTCTTCTTGAAGATGTTCCTAACCAAACATCGGTTCATCAAACTTCATCATCTGGAGGTGATTCAGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCAAGGAGTCGGAAACTCAAGCATGATGTAATTGAAGCTGTTAATGAGCTTATTCAGGATATCGCAACTTGTCATGAACAGATTGCTGAGCAAGCAGTGGAGCACATTCATCAAAACGAGGTAATATTGACTTTGGGGAGTTCCAGAACAGTGTTGGAATTTCTTTGTGCTGCTAAGGAGAAGAAAAGGTCCTTCCGGGTGTTTGTTGCTGAGGGTGCTCCAAGATATCAGGGTCATCTTCTTGCTAAGGAGTTGGTTACAAGAGGTTTACAGACCACACTTATTACTGATTCTGCAGTTTTTGCCATGATTTCACGGGTGAATATGGTAATAGTTGGAGCTCATGCTGTCATGGCAAATGGTGGTGTCATGGCACCAGTTGGATTGAATATGGTGGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTGCTAGCTGGAAGTCACAAGTTATGCCCTCTGTATCCTCACAATCCCGAAGTTCTACTCAATGAACTGAGGTCACCGTCAGAGCTACTGGACTTTGGTGAATTTTCAGATTGCATGGACTTTGGAACTTGCACTGGTTCTCCTCTTCTCCATGTAGTCAATCCTACGTTTGACTATGTGCCACCCTCGCTTGTTAGTTTATTTATTACTGACACTGGTGGCCATAACTCATCATACATGTATCGGCTTATTGCTGATTATTATTCAGCTGATGATTTGGTAATTAAAAGGTCTTCTACAGGCAGCTGA 1251 44.52 MPDVQAIVNDFVIKLMKRKIEGSLATAKHTAELLRSVISAQRIPYTNQAAALIDAVKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLTTASIAGLSLSAVSDDEDDIEKDDRPVLSAAAVAAAARSTLRPPSLQTLLEDVPNQTSVHQTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVTRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGTCTGSPLLHVVNPTFDYVPPSLVSLFITDTGGHNSSYMYRLIADYYSADDLVIKRSSTGS* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19732204 19744343 + CsaV3_5G024790.1 Csa05g01660 530047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01660 416 Pfam Initiation factor 2 subunit family 165 389 IPR000649 GO:0044237
Csa05g01660 416 Pfam Initiation factor 2 subunit family 19 122 IPR000649 GO:0044237
Csa05g01660 416 PANTHER BNAA01G32370D PROTEIN 54 409 - -
Csa05g01660 416 Gene3D - 194 401 IPR042529 -
Csa05g01660 416 MobiDBLite consensus disorder prediction 162 176 - -
Csa05g01660 416 MobiDBLite consensus disorder prediction 142 161 - -
Csa05g01660 416 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 54 409 - -
Csa05g01660 416 SUPERFAMILY NagB/RpiA/CoA transferase-like 7 406 IPR037171 -
Csa05g01660 416 MobiDBLite consensus disorder prediction 142 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00355 Csa-Chr1:2204418 Csa05g01660 Csa-Chr5:19732204 9.54E-19 dispersed
Csa01g00356 Csa-Chr1:2213060 Csa05g01660 Csa-Chr5:19732204 1.23E-18 dispersed
Csa01g03001 Csa-Chr1:26196639 Csa05g01660 Csa-Chr5:19732204 8.01E-16 dispersed
Csa05g01660 Csa-Chr5:19732204 Csa07g02308 Csa-Chr7:21450899 8.94E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01660 K03754 - csv:101220366 770.77