Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01662 | ATGGCATCTGGAAGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAGGTTATTGATCCTCCTCAGAATGAAGATATGATGGATATCAGAGAAACCGTGGACCATCCAATTCAAAATGAACTTAAACCGAACGTTGCTGTTTCCAGCAGTGTTCGTGAGCTTTTGGAATGTCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGCCACACATTGTGCTCTGGTTGCAAGCCTCGGGTGCATAATCGCTGCCCTACGTGTAGGCATGAACTTGGCAATATTAGATGCCTTGCATTGGAGAAGGTGGCGGCATCTCTAGAACTTCCGTGTAAATATCATACCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGCGTTTATAGACCATATAGCTGTCCATATGCTGGTTCCGAATGTTCAATCGTCGGTGACATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAGGTAGACATGCATAGTGGAAGCACATTCAACCATCGTTACGTAAAATCAAATCCTCAAGAAGTTGAAAATGCAACATGGATGCTAACGGTCTTCAGTTGCTTTGGTCAGTACTTTTGTTTGCATTTCGAAGCTTTCCAGCTTGGGATGGCTCCAGTATACATAGCTTTTTTACGGTTCATGGGCGACGATAATGATGCAAAGAACTACAGCTATAGTCTTGAGGTAGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTCTTCTCCGGTGGGGATAGGAAGGAACTAAAGCTTAGGGTGACGGGTAGAATTTGGAAAGAACAGTGA | 918 | 44.55 | MASGSPYFDDLRSKPEVIDPPQNEDMMDIRETVDHPIQNELKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYHTYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSIVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19753772 | 19755725 | + | CsaV3_5G024810.1 | Csa05g01662 | 530049 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01662 | 305 | Pfam | Seven in absentia protein family | 99 | 298 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Csa05g01662 | 305 | SUPERFAMILY | TRAF domain-like | 110 | 302 | - | - | |
Csa05g01662 | 305 | SUPERFAMILY | RING/U-box | 51 | 98 | - | - | |
Csa05g01662 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 165 | IPR013083 | - | |
Csa05g01662 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 111 | IPR013083 | - | |
Csa05g01662 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270 | |
Csa05g01662 | 305 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 7 | 305 | - | - | |
Csa05g01662 | 305 | CDD | Sina | 171 | 299 | - | - | |
Csa05g01662 | 305 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
Csa05g01662 | 305 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 7 | 305 | - | - | |
Csa05g01662 | 305 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Csa05g01662 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
Csa05g01662 | 305 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 298 | IPR008974 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g01662 | Csa-Chr5:19753772 | Csa05g02847 | Csa-Chr5:28844932 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01662 | K04506 | - | csv:101220834 | 651.358 |