Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01662 ATGGCATCTGGAAGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAGGTTATTGATCCTCCTCAGAATGAAGATATGATGGATATCAGAGAAACCGTGGACCATCCAATTCAAAATGAACTTAAACCGAACGTTGCTGTTTCCAGCAGTGTTCGTGAGCTTTTGGAATGTCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGCCACACATTGTGCTCTGGTTGCAAGCCTCGGGTGCATAATCGCTGCCCTACGTGTAGGCATGAACTTGGCAATATTAGATGCCTTGCATTGGAGAAGGTGGCGGCATCTCTAGAACTTCCGTGTAAATATCATACCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGCGTTTATAGACCATATAGCTGTCCATATGCTGGTTCCGAATGTTCAATCGTCGGTGACATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAGGTAGACATGCATAGTGGAAGCACATTCAACCATCGTTACGTAAAATCAAATCCTCAAGAAGTTGAAAATGCAACATGGATGCTAACGGTCTTCAGTTGCTTTGGTCAGTACTTTTGTTTGCATTTCGAAGCTTTCCAGCTTGGGATGGCTCCAGTATACATAGCTTTTTTACGGTTCATGGGCGACGATAATGATGCAAAGAACTACAGCTATAGTCTTGAGGTAGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTCTTCTCCGGTGGGGATAGGAAGGAACTAAAGCTTAGGGTGACGGGTAGAATTTGGAAAGAACAGTGA 918 44.55 MASGSPYFDDLRSKPEVIDPPQNEDMMDIRETVDHPIQNELKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYHTYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSIVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19753772 19755725 + CsaV3_5G024810.1 Csa05g01662 530049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01662 305 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Csa05g01662 305 SUPERFAMILY TRAF domain-like 110 302 - -
Csa05g01662 305 SUPERFAMILY RING/U-box 51 98 - -
Csa05g01662 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 165 IPR013083 -
Csa05g01662 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 111 IPR013083 -
Csa05g01662 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
Csa05g01662 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 305 - -
Csa05g01662 305 CDD Sina 171 299 - -
Csa05g01662 305 CDD RING-HC_SIAHs 55 93 - -
Csa05g01662 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 305 - -
Csa05g01662 305 MobiDBLite consensus disorder prediction 1 22 - -
Csa05g01662 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Csa05g01662 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01662 Csa-Chr5:19753772 Csa05g02847 Csa-Chr5:28844932 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01662 K04506 - csv:101220834 651.358