Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01664 ATGCGTTCTGATGATTTTGTTTTCATGCACAGAAGAAGGCATGGGGAGAATAATATTTCCTCATTCTTTCATGATTTGTGTGCACATTATTTGACGCTGGAAATGTCAACCCAGCAGCAGAATTCTGATTCAAACGGCGTTTCAGGTGCCTGTCTGTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCCCTCTGATTCAGAAACACAACGCTGGAATTGGAAGAAGGACCAACGGCTTTCTGGCCCCCAGAAAAGGTTGGAAGATCTGTTGCAGCAATCTGGTAATATGTTTTGTGCAGATTGCGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATTTGTATTAAGTGCTCTGGAGTACACAGAAGTCTTGGAGTTCATGTCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAGCAAGTCGATACTTTCATGAGCATGGGGGGAAATACAGATATAAACAGGAAGTTTGAAGCTGGCATCATCGATTTGAACCGAAAACCAAAACCAGATTCTTGTATAGAGGAGCGCTTTGATTTTATAAGGAGAAAGTATGAACTGCTACAATTTTATAACGCCAGTAGTAGTCAAAATTCTAGTGATAACAACTCACTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACTCTTCAAGCAAGAATGGTAGCCACGACAAAAGACACTATGAGAAACAAGCTACTAGGCATCGCGTTGGCCATGCATTTCGTAACAGTCGAGGAAGAAGAGATGGTGACCACAACCACAGGAATTTCGAGAGGAGCAGCCCTCCAGTCTCAAGACAAGCATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAAAGGGAGAAACCTAGCTGTCCGAGACGTGGTGACCAGCGATCCCTATGTAATTCTCTCGTTAGGGCATCAATCTGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAATGAGAGCCTAATGTTGTCGATTCCCGAGCATATCCCTCCACTAAAAGTGCTTGTCTATGATAAGGACACATTTACAACTGATGATTTTATGGGTGAAGCTGAAATCGACATTCAACCATTGGTCTCAGCAACCAAGGCGTATGAGAAGTCCACAATTGATGAATCAATGCAGTTGGGAAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAGGACATATCTCTTAGATTGCAGAATGTGGAAAGAGGTGTCCTTGAGATTGAACTAGAATGCATTCCTCTTACACAATAG 1353 42.42 MRSDDFVFMHRRRHGENNISSFFHDLCAHYLTLEMSTQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMPSDSETQRWNWKKDQRLSGPQKRLEDLLQQSGNMFCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHVSKVFSVKLDNWTDEQVDTFMSMGGNTDINRKFEAGIIDLNRKPKPDSCIEERFDFIRRKYELLQFYNASSSQNSSDNNSLSKRSSSCSQSSNSSSKNGSHDKRHYEKQATRHRVGHAFRNSRGRRDGDHNHRNFERSSPPVSRQASAGMVEFVGLVKVNVVKGRNLAVRDVVTSDPYVILSLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFTTDDFMGEAEIDIQPLVSATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGVLEIELECIPLTQ* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19769497 19784174 + CsaV3_5G024830.1 Csa05g01664 530051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01664 450 Gene3D Arf GTPase activating protein 72 214 IPR038508 -
Csa05g01664 450 PRINTS HIV Rev interacting protein signature 143 164 IPR001164 GO:0005096
Csa05g01664 450 PRINTS HIV Rev interacting protein signature 103 122 IPR001164 GO:0005096
Csa05g01664 450 PRINTS HIV Rev interacting protein signature 122 139 IPR001164 GO:0005096
Csa05g01664 450 CDD C2_ArfGAP 293 437 - -
Csa05g01664 450 ProSiteProfiles C2 domain profile. 275 392 IPR000008 -
Csa05g01664 450 SMART arf_gap_3 91 213 IPR001164 GO:0005096
Csa05g01664 450 ProSiteProfiles ARF GTPase-activating proteins domain profile. 91 213 IPR001164 GO:0005096
Csa05g01664 450 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 35 450 IPR044518 GO:0005096|GO:0005543
Csa05g01664 450 SUPERFAMILY ArfGap/RecO-like zinc finger 91 206 IPR037278 -
Csa05g01664 450 CDD ArfGap 94 200 - -
Csa05g01664 450 Pfam Putative GTPase activating protein for Arf 92 207 IPR001164 GO:0005096
Csa05g01664 450 Gene3D C2 domain 293 448 IPR035892 -
Csa05g01664 450 MobiDBLite consensus disorder prediction 209 236 - -
Csa05g01664 450 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 291 386 IPR035892 -
Csa05g01664 450 SMART C2_3c 295 390 IPR000008 -
Csa05g01664 450 MobiDBLite consensus disorder prediction 260 276 - -
Csa05g01664 450 Pfam C2 domain 295 385 IPR000008 -
Csa05g01664 450 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 35 450 - -
Csa05g01664 450 MobiDBLite consensus disorder prediction 209 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02626 Csa-Chr1:23243264 Csa05g01664 Csa-Chr5:19769497 7.78E-111 dispersed
Csa05g01197 Csa-Chr5:12434134 Csa05g01664 Csa-Chr5:19769497 3.34E-19 dispersed
Csa05g01664 Csa-Chr5:19769497 Csa05g02849 Csa-Chr5:28851628 7.04E-180 dispersed
Csa05g01664 Csa-Chr5:19769497 Csa06g03849 Csa-Chr6:30542624 2.97E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01664 K12486 - csv:101215531 802.742