Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01668 ATGGCGCTCTCTGATAAACCCTCTCGCCAATCTCTGATCCCCAGCTTCCTTTACTCTTCCCCTTCTTCCACTCGAACCCTTCCTCTCATGAAGATGCTTCAGTCTTCACCCACTCTCGATTCCGTTTCCTCTTCTTCTCCTAAGAGCTTTGTTATTCCTTCCCCCACTGAGCCTTCCAAGAAGATCGAGATGTACTCTCCGGCCTTCTACACTGCGTGTACTTTTGGTGGAATTCTCAGCTGTGGTCTTACGCATATGACTGTTACTCCTCTTGATTTGGTTAAATGTAATATGCAGATTGATCCTGCGAAATACAAAAGTATTTCATCTGGTTTTGGAATTTTGCTCAAGGAGCAGGGTGTGAGGGGTTTCTTCAGGGGTTGGGTGCCTACCCTTCTTGGATACAGTGCACAGGGTGCTTGCAAGTTTGGATTCTACGAGTTCTTTAAGAAGTATTACTCTGATATTGCTGGACCTGAGTACGCTGCTAAGTACAAGACCTTGATCTACCTTGCCGGTTCTGCATCTGCTGAGGTGATTGCTGATATTGCTCTTTGCCCTTTTGAAGCAGTGAAGGTTCGTGTTCAAACGCAGCCTGGTTTTGCTAGAGGTCTAGCTGATGGACTTCCCAAGTTCGTCAGATCTGAAGGAACTCTTGGGTTGTACAAGGGTATTGTTCCACTCTGGGGACGACAGATTCCATACACGATGATGAAGTTTGCATCCTTTGAGACAATAGTTGAGATGCTATACAAGTATGCGATTCCCACACCAAAGGACCAGTGCAGCAAATCTCTCCAGCTTGGTGTTAGTTTTGCTGGTGGATATGTGGCTGGTGTTTTCTGTGCTATCGTGTCTCATCCTGCTGATAATCTTGTGTCGTTCCTCAACAACGCCAAAGGAGCAACTGTTGGTGATGCTGTCAAGAAGCTCGGATTATGGGGTCTCTTCACCCGTGGGCTACCTCTCCGTATTGTGATGATTGGAACTCTTACTGGTGCTCAATGGGGTATCTATGATGCCTTCAAAGTATTTGTTGGACTACCTACTACTGGTGGCCCAGCACCCGCTGCTGCCCCTGCACCCGCTGCAGCTGAGCTTGCAAAGGCGTGA 1113 47.62 MALSDKPSRQSLIPSFLYSSPSSTRTLPLMKMLQSSPTLDSVSSSSPKSFVIPSPTEPSKKIEMYSPAFYTACTFGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGILLKEQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLADGLPKFVRSEGTLGLYKGIVPLWGRQIPYTMMKFASFETIVEMLYKYAIPTPKDQCSKSLQLGVSFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPAPAAAPAPAAAELAKA* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19816552 19821268 - CsaV3_5G024870.1 Csa05g01668 530055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01668 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 266 345 IPR018108 -
Csa05g01668 370 PANTHER PHOSPHATE TRANSPORTER 1 360 - -
Csa05g01668 370 Gene3D Mitochondrial carrier domain 12 161 IPR023395 -
Csa05g01668 370 Gene3D Mitochondrial carrier domain 162 347 IPR023395 -
Csa05g01668 370 Pfam Mitochondrial carrier protein 71 154 IPR018108 -
Csa05g01668 370 Pfam Mitochondrial carrier protein 169 253 IPR018108 -
Csa05g01668 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 165 249 IPR018108 -
Csa05g01668 370 SUPERFAMILY Mitochondrial carrier 71 341 IPR023395 -
Csa05g01668 370 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 1 360 IPR044677 GO:0005315|GO:1990547
Csa05g01668 370 MobiDBLite consensus disorder prediction 1 23 - -
Csa05g01668 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 68 152 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00018 Csa-Chr1:124097 Csa05g01668 Csa-Chr5:19816552 0 dispersed
Csa03g02562 Csa-Chr3:23997850 Csa05g01668 Csa-Chr5:19816552 2.25E-168 dispersed
Csa05g01668 Csa-Chr5:19816552 Csa07g00198 Csa-Chr7:1604053 8.59E-106 dispersed
Csa05g01668 Csa-Chr5:19816552 Csa04g01544 Csa-Chr4:14989952 3.68E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01668 K15102 - csv:101221771 684.1