Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g01676 | ATGTCTTCCTCTCTTTCATGGTTCTTCTTCTTCTCTCTCTCCTTCTCTTTTTCCCCTACCGCCGCCGCCCTTTCCGACGATGCAATGTCGCTACTCATGTTTAAAAGCTCCATTTCTTTCGGTGCTTCTCATGTTCTTCGTAGTTGGAATTTGTCGGTTTCTCACTGCGATTGGTTTGGTGTTACTTGCGGTAATGGTGGTACGGATAGAGTAGTGGCGCTGAATATTAGTGGAGGTATTATTGGTGGTGTTCTGGCGGAGGGTTCTTTTCTGGCTGGGACGTTGAATCCGTCGATTGGAAATCTTGTTCAGCTTCGTGTTTTGTCGCTTCCCAATAATTTGATGTACGGGGAGATTCCCGGGACTGTTGGTAAGCTTCAGTCGTTAGAGATTCTTGAGCTTCAGGGGAACAACTTCTCTGGTGAGATTCCGAATCAGATAAGCTCACTTCCATCTCTCCGCTTGCTTAATTTGTCTGATAACTCGGTTTCGGGTTGGGTTCCGAGTAAATTGATTGGTTCGGGAAAATTAGAAGTAATTGATTTGTCGTACAATCAATTATCTGGTAATATTCAAGTTGTTGATAATAGATGTGGTGCTTTGAATCATTTGAGGCTTTCGCATAATTTTCTGACTGGTAACATTCCAGCGGAGATTGGACAATGTTGGAAACTCAGGACTCTGTTACTCGATGGGAATATATTAGAGGGGAAAATTCCGGCTGAGATCGGCCAAATATCAGAACTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACTGATTCGATTCCAAAAGAGCTTGGTAATTGCCGGAAGTTGTCACAGATCGTGTTAACGAATTTGAACGATATCAATCCCGATAACGATAGTTTAAGAGGAGAATTCAACGCCTTCAATGGAGGTATTCCTTCTGGGTTGTTATTGCTTCCAAGTCTACAAGTTTTGTGGGCACCCAGAGGGAATTTTAATGGAAGATTGCCGACTAATTGGAATTCTTTATGCTCGCTTAAAGTTCTTAATTTAGGGCAAAATTATATCACTGGTACCATACCCGAATCGATTCGGAAATGTGCGAATCTAACTTACTTGGATTTATCTTCAAACAAGCTTCAAGGTAACCTTCCTTCCCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTTCTTCCCAGATTTGAGAAAGACAGTTTTTGTACGAACTTGATTCCCATGTTATCTGATCAGGAAGACGATTGGAATTCTTACTTAAATTTTCCTGTTTGGGATTTCACGAGACTAAATGATAATCTCCTAATTGCTCATGATTTTAGCTGGAATAGGTTTAGTGGCTCATTAGCTTCAGTCAAAGTGGGAGAAGAGCTTTTGGCTAATGGCATTAAGTTCTCGTACAAACTGCTTCTTAATAGCAACAAGTTCAATGGACCACTTCCCATTGATCTGATCTCGCATTGTAACGATATGAAAGGTGTTTTGGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAATTAATTGAGTTTGAGGCAGCAAGCAATGAACTAGATAACTCGATTGGATCTCGAATTGGTGAATTGCAGATGCTTCGTCGTCTTGACTTGAGAGGGAATAGATTGTGTGGAGTTTTACCTGATCAGTTGGGGAATTTGCAAACTTTGAAATGGATGCTTTTGGGGGGAAACAATTTGACTGGAGAGATTCCATCTCGACTTAGTCAATTGACTTCTCTCTTGAGTTTAGATCTTTCTCGAAACTTGTTTACTGGCTTTATCCCGGACAGCTTGTCATATGCTTCGAGACTTGAGATTCTGTTGCTTGATCATAACAGGTTAACTGGGGAAATACCAGAATCTTTCTCTGCACTCTCACATCTCACTAAATTAGATGTGTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCACCACACGTTTGACTGCATTTACTTTGGTGGGAATAAGTTTCTTCATCCATGCCCAGATTCATACTCTGATTCCCCTGCTGGACTTCCAGTTCCTCTTGATGTTGAGAAGTGGAAGAGACGAAGAAAGTTTATGTCCATGGTAATCGCTGTAGCTGCTTCCTCAACACTAATTTGCTTACTCTTAATGATAGCTGTCATCATCATTGTTAAGAGAAGGCTTGGTAAACAAAATAGGTTAAAAAAGAAACAAGTGGTTACTTTCTCAGATGCTCCTTCCGATCTGAATTATGATAATGTAGTCCGAGCTACCGAAAATTTCAGCCTTCGTTACCTAATCGGTACAGGTGGCTTCGGATCAACATACAAAGCTGAACTGCCCTCAGGTTTCCTGGTTGCTGTAAAGAGATTGTCCATTGGTAGGTTTCAAGGAGGGATTCAACAATTCGACGCAGAGATTCGAACATTAGGAAGAATACGACACAAAAACCTCGTAACTCTTCTCGGGTACTACGTCGGAGAGGCTGAAATGTTCTTAGTTTACAACTATCTTTCTGGTGGGAACCTTGAGACTTTCATCCATGAAAAATCTTGCAAACATGTCAAGCACTCGGTTATCCACAAGATCGCTTTGGACATAGCGAGAGCTCTTGCATACCTTCATTACTCCTGTGATCCTAGGATTGTTCATAGAGATATCAAACCTAGTAACATCCTGCTTGATGAAGACCACAACACCTACATATCGGATTTTGGGTTAGCAAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATATGCTACAACATGTCGGGTCTCGGATAAAGCCGATGTTTATAGCTTTGGAGTTGTGCTACTAGAGTTGCTTTCTGGAAAAAGATCCCTTGATCGATCCTTTTCCGACTTTGGGAATGGATTTAACATTGTTACATGGGCAAATATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTCGAGAAATGGGACCTAAGGAACACTTACTTGGAATGTTAAAACTTGCGTCTAATTGCACAGTTGAAACTCTGGCACTTCGACCGTCAATGAAGCAAGTCGTGGAGACACTGAAACAGTTGTAA | 3126 | 41.27 | MSSSLSWFFFFSLSFSFSPTAAALSDDAMSLLMFKSSISFGASHVLRSWNLSVSHCDWFGVTCGNGGTDRVVALNISGGIIGGVLAEGSFLAGTLNPSIGNLVQLRVLSLPNNLMYGEIPGTVGKLQSLEILELQGNNFSGEIPNQISSLPSLRLLNLSDNSVSGWVPSKLIGSGKLEVIDLSYNQLSGNIQVVDNRCGALNHLRLSHNFLTGNIPAEIGQCWKLRTLLLDGNILEGKIPAEIGQISELRILDVSRNSLTDSIPKELGNCRKLSQIVLTNLNDINPDNDSLRGEFNAFNGGIPSGLLLLPSLQVLWAPRGNFNGRLPTNWNSLCSLKVLNLGQNYITGTIPESIRKCANLTYLDLSSNKLQGNLPSQLRVSCMAYFNVSQNKISGVLPRFEKDSFCTNLIPMLSDQEDDWNSYLNFPVWDFTRLNDNLLIAHDFSWNRFSGSLASVKVGEELLANGIKFSYKLLLNSNKFNGPLPIDLISHCNDMKGVLVNLSSNLVSGEISDAFFLHCRQLIEFEAASNELDNSIGSRIGELQMLRRLDLRGNRLCGVLPDQLGNLQTLKWMLLGGNNLTGEIPSRLSQLTSLLSLDLSRNLFTGFIPDSLSYASRLEILLLDHNRLTGEIPESFSALSHLTKLDVSFNNLSGHIPHLHHTFDCIYFGGNKFLHPCPDSYSDSPAGLPVPLDVEKWKRRRKFMSMVIAVAASSTLICLLLMIAVIIIVKRRLGKQNRLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIALDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWANMLIKEGRSSELFTPELREMGPKEHLLGMLKLASNCTVETLALRPSMKQVVETLKQL* | 1042 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 19932472 | 19935597 | - | CsaV3_5G024950.1 | Csa05g01676 | 530063 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g01676 | 1041 | Pfam | Leucine rich repeat N-terminal domain | 25 | 63 | IPR013210 | - | |
| Csa05g01676 | 1041 | Gene3D | Ribonuclease Inhibitor | 197 | 287 | IPR032675 | - | |
| Csa05g01676 | 1041 | SUPERFAMILY | RNI-like | 92 | 399 | - | - | |
| Csa05g01676 | 1041 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 5 | 1041 | - | - | |
| Csa05g01676 | 1041 | Gene3D | Ribonuclease Inhibitor | 421 | 686 | IPR032675 | - | |
| Csa05g01676 | 1041 | Pfam | Protein kinase domain | 771 | 1036 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa05g01676 | 1041 | SUPERFAMILY | L domain-like | 297 | 661 | - | - | |
| Csa05g01676 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 728 | 842 | - | - | |
| Csa05g01676 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 772 | 794 | IPR017441 | GO:0005524 | |
| Csa05g01676 | 1041 | SMART | serkin_6 | 766 | 1041 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa05g01676 | 1041 | Gene3D | Ribonuclease Inhibitor | 26 | 196 | IPR032675 | - | |
| Csa05g01676 | 1041 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 | 5 | 1041 | - | - | |
| Csa05g01676 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 766 | 1041 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Csa05g01676 | 1041 | CDD | STKc_IRAK | 772 | 1041 | - | - | |
| Csa05g01676 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 887 | 899 | IPR008271 | GO:0004672|GO:0006468 | |
| Csa05g01676 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 743 | 1038 | IPR011009 | - | |
| Csa05g01676 | 1041 | Pfam | Leucine rich repeat | 332 | 370 | IPR001611 | GO:0005515 | |
| Csa05g01676 | 1041 | Pfam | Leucine rich repeat | 104 | 162 | IPR001611 | GO:0005515 | |
| Csa05g01676 | 1041 | Gene3D | Ribonuclease Inhibitor | 288 | 415 | IPR032675 | - | |
| Csa05g01676 | 1041 | SMART | LRR_typ_2 | 126 | 150 | IPR003591 | - | |
| Csa05g01676 | 1041 | SMART | LRR_typ_2 | 333 | 357 | IPR003591 | - | |
| Csa05g01676 | 1041 | SMART | LRR_typ_2 | 543 | 567 | IPR003591 | - | |
| Csa05g01676 | 1041 | SMART | LRR_typ_2 | 246 | 270 | IPR003591 | - | |
| Csa05g01676 | 1041 | SMART | LRR_typ_2 | 591 | 614 | IPR003591 | - | |
| Csa05g01676 | 1041 | SMART | LRR_typ_2 | 639 | 665 | IPR003591 | - | |
| Csa05g01676 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 843 | 1041 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g00913 | Csa-Chr4:6672460 | Csa05g01676 | Csa-Chr5:19932472 | 0 | dispersed | |
| Csa05g01676 | Csa-Chr5:19932472 | Csa03g01135 | Csa-Chr3:8937734 | 2.19E-135 | dispersed | |
| Csa05g01676 | Csa-Chr5:19932472 | Csa02g00996 | Csa-Chr2:9583496 | 8.29E-132 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 78251 | PF00069 | Pkinase | 8.90E-45 | CL0016 | Csa | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g01676 | - | - | csv:101202920 | 2000.71 |