Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01684 ATGGCTTCCACTTCCACCTCTACTATCTCTTTTTGCTCTCATCCTAAGATTTTCCTCCGGCTTCATTCGCTAGGGTCCCCACGTGTGGGCTTCGGCGCTTCTGGCTTGAACTACCATGCCAATGGTGCGTTCCTCTCGGTTACGCATAGGACAAGAGGTTTCAGATTGAGAAACTTGGTGCTGAAGGCTACGTTGAGGTCCGACAGCGGTTCCAGGCGGGCTGCAACTTCTCGAAGAGTTTACAGAGACTCTCAAACTCAGAGCTCATCGTTGGTTGCCCCGGTCAAGCAGCTTGCCTCTACTGTTTTGCCTGCCGGTGTTTTGGTTGTGTTTACGTTCGTTTTATGGAAATTGGTGGAGAGACTCATGGTTCAGAAGTCAGATAAGTCGTCTTCATCCGTGAAAAACAAATGGTCGTTTGGTGCTGGTATAAATTTGTTTCCGGATCTTGCTGCCAAGGTTGACAGAGAAGCCAAATTGAAGCTTAATGACTTTGCAAAAGAGCTCCGAACTTTTAGAAGTGTTGACATGACAGCACGCAACTTTGGAGATGAAGGACTCTTTTTTCTTGCCGAGAGTTTAGGATACAATCAGACAGTTGAGGAAGTTAATTTTTCTGCAAATGGAATAACAGCTGAAGGGATAAAAGCCTTTGATGGTGTCCTTCAATCAAATATTATTTTAAAGACCCTTGATCTTTCTGGAAACCCAATTGGAGACGATGGAGTTAAGACTCTGTGTGATTTGCTAGTGAATAATTCTAGCATTGAGACGCTTCGGCTAAACAGTACTGACGTGGGAGATGAGGGTGCAAAAGCTGTTTCCGAGATGCTGAAGAATAATTCAAGCTTGCGCATAATTGAGCTTAACAATAATATGATTGATTATTCTGGATTTACAAGTCTTGGCGGAGCACTTCTTGAAAACAACACCATACGGAACATACATCTTACTGGCAATTATGGTGGTGCCCTGGGAGCTAATGCTTTGGCTAAAGGACTTGAAGGGAACAAATCACTGAGGGAACTTCATCTGAATGGAAATTCAATCGGTGACGAGGGGGTGCGTACCTTAATTTCAGGTTTATCGTCGCGTAAAGGAAAACTTGCACTTCTTGACATTGGTAACAACTCAATCACTGCCAAAGGTGCCTTTCATGTTGCCGAATTCGTTAAGAGAACTAAGAGCTTGGTTTTGTTGAATTTGTACATGAATGATATCGGTGATGAGGGTGCTGAAAAGATTGCTGATTCTCTAAAGCAAAATCGGACAATAAAAACTTTAGATCTGGGAGGGAATAACATACATGGTGAGGGTATTAGCAAGGTCGCTCAAGCATTGAAGGATAACGATACCATCACAACTTTGGAAATTTCTTATAATCCCATTGGACCAGAAGGAGCGGAGGCTTTATCTGAGGTGCTGAAGTTCCATGGAAATGTAAAAAATCTCAAGCTTGGTTGGTGTAAGATAGGACCAAAGGGTGCTGAATTTATTGCAGAAACTCTGAAATATAATACTACAATATCTGTCTTGGATTTACGGGGCAATGGTCTACGGGACGAGGGTGCAACTTGCCTTGCTCGCAGCTTGAAAGTGGTCAACGAAGCTTTAACTTCACTAGATTTAGGTTTCAATGAAATAAGGGATCCAGGTGCTTTCGCCATTGCTCAAGCACTCAAAGCGAACGGGGACATAGCAGTTACATCCTTGAATCTCGCCAATAACTTCCTGACCAAATTCGGGCAGAGTGCTTTAACAGATGCCAGAGATCATGTCCATGAGATGTGTGAAAGGGAAGTTTGTATTTCTTACTAA 1818 43.18 MASTSTSTISFCSHPKIFLRLHSLGSPRVGFGASGLNYHANGAFLSVTHRTRGFRLRNLVLKATLRSDSGSRRAATSRRVYRDSQTQSSSLVAPVKQLASTVLPAGVLVVFTFVLWKLVERLMVQKSDKSSSSVKNKWSFGAGINLFPDLAAKVDREAKLKLNDFAKELRTFRSVDMTARNFGDEGLFFLAESLGYNQTVEEVNFSANGITAEGIKAFDGVLQSNIILKTLDLSGNPIGDDGVKTLCDLLVNNSSIETLRLNSTDVGDEGAKAVSEMLKNNSSLRIIELNNNMIDYSGFTSLGGALLENNTIRNIHLTGNYGGALGANALAKGLEGNKSLRELHLNGNSIGDEGVRTLISGLSSRKGKLALLDIGNNSITAKGAFHVAEFVKRTKSLVLLNLYMNDIGDEGAEKIADSLKQNRTIKTLDLGGNNIHGEGISKVAQALKDNDTITTLEISYNPIGPEGAEALSEVLKFHGNVKNLKLGWCKIGPKGAEFIAETLKYNTTISVLDLRGNGLRDEGATCLARSLKVVNEALTSLDLGFNEIRDPGAFAIAQALKANGDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCEREVCISY* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20040119 20069665 + CsaV3_5G025030.1 Csa05g01684 530071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01684 605 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 152 535 - -
Csa05g01684 605 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 539 591 - -
Csa05g01684 605 SMART LRR_RI_2 478 505 - -
Csa05g01684 605 SMART LRR_RI_2 253 280 - -
Csa05g01684 605 SMART LRR_RI_2 197 224 - -
Csa05g01684 605 SMART LRR_RI_2 394 421 - -
Csa05g01684 605 SMART LRR_RI_2 281 308 - -
Csa05g01684 605 SMART LRR_RI_2 309 336 - -
Csa05g01684 605 SMART LRR_RI_2 535 562 - -
Csa05g01684 605 SMART LRR_RI_2 337 364 - -
Csa05g01684 605 SMART LRR_RI_2 225 252 - -
Csa05g01684 605 SMART LRR_RI_2 450 477 - -
Csa05g01684 605 SMART LRR_RI_2 366 393 - -
Csa05g01684 605 SMART LRR_RI_2 506 533 - -
Csa05g01684 605 SMART LRR_RI_2 422 449 - -
Csa05g01684 605 Gene3D Ribonuclease Inhibitor 455 599 IPR032675 -
Csa05g01684 605 SUPERFAMILY RNI-like 323 594 - -
Csa05g01684 605 Pfam Leucine Rich repeat 397 416 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 196 218 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 538 557 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 227 247 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 451 472 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 421 444 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 481 500 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 252 274 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 337 357 IPR001611 GO:0005515
Csa05g01684 605 Pfam Leucine Rich repeat 505 528 IPR001611 GO:0005515
Csa05g01684 605 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN 539 591 - -
Csa05g01684 605 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN 152 535 - -
Csa05g01684 605 SUPERFAMILY RNI-like 163 383 - -
Csa05g01684 605 Gene3D Ribonuclease Inhibitor 155 366 IPR032675 -
Csa05g01684 605 Gene3D Ribonuclease Inhibitor 367 454 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01684 K22614 NLRC3, NOD3; NLR family CARD domain-containing protein 3 - csv:101204132 1147.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01684 Csa-Chr5:20040119 Csa07g01667 Csa-Chr7:17126895 6.11E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g769 . . . . Bpe13g00481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01684 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011878 1 3 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 28