Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01687 ATGCCGCCCCACGGATCCAAATCCGACAAGCAAGATGCGGCCTTGTTGCACCGTCGAGATCCCTATGAGGTTCTCGGTGTCTCCAGGAACTCCACGGATCAGGAAATCAAAAGCGCTTATAGAAGAATGGCTCTCAAGTATCATCCTGACAAGAATGCAAACGATCCCAAAGCTGCTGACATGTTTAAGGAGGTCACTTTTTCGTACACCATTTTGTCAGATCCAGAAAAAAGACGACAGTATGATGCTTCTGGCTTTGAGGCTGTTGAAACAGAAAGCCAAGAATTGGAGCTAGATCTTTCAAGTCTGGGGGCAGTGAACACCATGTTTGCTGCCCTTTTTAGCAAACTTGGTGTGCCGATTAAAACTACTGTATCAGCAACAGTTTTGGAAGAGGCTCTTAATGGGGTTGTGACTGTTCATCCACTTCCATTGGGCACTCCTATTTCTAAAAAGGTTGAGAAACAATGTGCTCATTTTTATTCTGTTATGATTAGCGAAGAGGAAACACAGGGTGGACTTGTTTGCCGAGTTCAATCACCTGATAAAAGCAAATTTAAGTTACTGTATTTTGATCGCGAAGAAACTGGTGGATTAAACCTTGCTTTACAGGAGGAAAGTACAAAAATAGGAAAAGTCACATCTGCTGGGATGTATTTTCTTGGTTTCCCTGTATATCGGTTGGACCAAACAGCAAACTCGATGACTTCCGCTAAGGATCCAGATGCTGCCTTTTTTAAAAAGCTAGATGGATTCCAGCCATGTGAAATAACTGAATTAAAGGCTGGAACTCATGTCTTTGCAGTTTATGGTGACAATTTTTTTAAAAGTGTGAGCTATACAATCGAGGCCTTTTCTGCAGCATCGTTTGCTGAAGAGAAGGACAATCTTAGATCGGTAGAAGCTCAAATTTTGACAAAAAGGGTGGAAATATCAAAATTTGAAACAGAATATCGTGAGGTTCTGGCTCAATTTACGGAGATGACCGGTAGATACACTCAAGAAATGCAAGTGATTGATGAGCTTCTCAAACAGAGGAATGAAATTCATGCCTCCTACACAACTGGTCCTCCAATAAAACGGAGTAGGAGTCGAATTAGGGGTTCTTTTAAGGATGCAAAAGAAGATGGCCAAATAAGGGAGAGAAAATCTACAAGGGATAGGCCTAAGAAGAAAAAATGGTTCAATATCCATTTAAAGGTTGAGAAAAGAAAATCTTGCTAA 1224 41.18 MPPHGSKSDKQDAALLHRRDPYEVLGVSRNSTDQEIKSAYRRMALKYHPDKNANDPKAADMFKEVTFSYTILSDPEKRRQYDASGFEAVETESQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVTVHPLPLGTPISKKVEKQCAHFYSVMISEEETQGGLVCRVQSPDKSKFKLLYFDREETGGLNLALQEESTKIGKVTSAGMYFLGFPVYRLDQTANSMTSAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFKSVSYTIEAFSAASFAEEKDNLRSVEAQILTKRVEISKFETEYREVLAQFTEMTGRYTQEMQVIDELLKQRNEIHASYTTGPPIKRSRSRIRGSFKDAKEDGQIRERKSTRDRPKKKKWFNIHLKVEKRKSC* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20072544 20077846 - CsaV3_5G025060.1 Csa05g01687 530074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01687 407 SMART dnaj_3 19 77 IPR001623 -
Csa05g01687 407 MobiDBLite consensus disorder prediction 353 391 - -
Csa05g01687 407 CDD DnaJ 20 74 IPR001623 -
Csa05g01687 407 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 406 - -
Csa05g01687 407 MobiDBLite consensus disorder prediction 365 384 - -
Csa05g01687 407 Gene3D DnaJ domain 5 103 IPR036869 -
Csa05g01687 407 PRINTS DnaJ domain signature 22 40 IPR001623 -
Csa05g01687 407 PRINTS DnaJ domain signature 40 55 IPR001623 -
Csa05g01687 407 PRINTS DnaJ domain signature 57 77 IPR001623 -
Csa05g01687 407 PRINTS DnaJ domain signature 77 96 IPR001623 -
Csa05g01687 407 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Csa05g01687 407 SUPERFAMILY Chaperone J-domain 17 90 IPR036869 -
Csa05g01687 407 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 406 - -
Csa05g01687 407 Pfam DnaJ domain 20 82 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01687 - - - csv:101204372 792.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01687 Csa-Chr5:20072544 Csa05g02067 Csa-Chr5:23969057 7.29E-179 dispersed
Csa07g00535 Csa-Chr7:3934701 Csa05g01687 Csa-Chr5:20072544 2.00E-11 dispersed
Csa05g01687 Csa-Chr5:20072544 Csa05g02628 Csa-Chr5:27412333 1.70E-179 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g787 Blo01g00407 Blo16g01146 Bda01g02237 . Bpe13g00480 . . . . Cmo18g01213 . Cma18g01231 . Car18g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00067 . . . . . . . . . Cpe07g00640 . . . . . . . . . . . . . . . Csa05g01687 Chy09g00629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007840 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 4 1 36