Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01698 ATGGCGGCCAACCCCAACTCCGTTTCCTTCAGGGTTCCCTACAGGAACCTCCATGATGCAGAAGTGGAGATGGTGGCTGTCGATGAACACCAGCTTCACGGGATCGATCTCAATTCTCCTTCTTCTGATGGATGTCCCAATGGAAGCCAACCTGAACACAGTTTTCCCTCTTCGCCCCATATTAGATCTAAGCCCAGTAGTTTGATTATCTTAATTCTCAGTTGTACTATCGCTGCCGGTGTTCAATTTGGTTGGGCATTACAGCTTTCCCTTCTAACTCCCTATATTCAGACGCTCGGAATTGAGCATGCATTTTCTTCCTTTATTTGGCTATGTGGTCCCATCACTGGGCTCGTGGTTCAACCATGTGTCGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTCATTCTTGCTGGGTCCTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATATTAGGAGATACAAAGGAGCATTGCAGAGTATATAAGGGTACACGAACAAGGGCAGCTATTATCTTTGTAATAGGGTTTTGGATGCTTGATCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAGCACAATGTTGCAAATGCGGTATTTTGTTCATGGATGGCTGTTGGTAATATTCTAGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTTCTCTTAAGTAATGCTTGCTGCGAAGCCTGTGGAAACCTTAAAGCTGCATTTCTTATTGCTGTGCTTTTTCTAACCATATGTACTCTTGTTACAATATATTTTGCCGATGAAGTTCCACTTACTGCTGTAGATCAACCACCACGCTTATCAGATTCTGCTCCCCTGTTGAATGGGAGTGAACAAAATAGTCCTGATATTTTAAAACCAGAACTTAATGGTTTGAATGGGAGCAGCGTTGACTATGGCCATCATGAAAATATTAATTTGAAAAATTCGAAAGCAGAAAGTGAGGAAAATCAAAGCGAAGGTTATTATGATGGTCCTGCAACAGTAATAGTTAAATTGTTGACTAGTTTAAGACATTTACCACCTGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGCTGGTTATCTTGGTTTCCCTTCTTCTTATTTGACACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAGGGCAGTTTGACTGACGAACGGGTTTATGATCAGGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTTATAGAGCCCATGTGTCAGCGCATGGGAGCCAGGGTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGACGGGAACTACTATTATTAGTTTAATATCCGTCAGTCATTACTCTGAAGGAATTGAACATATTATTGGGGGAAACTCAACAATAAAAAATGCTGCCTTGGCTGTTTTTGCACTTCTTGGTTTTCCTCTTGCCATAACATATAGTGTACCCTTCTCTTTGACGGCAGAATTGACTGCCGATTCTGGTGGTGGCCAAGGATTGGCTATAGGAGTTCTCAATCTTGCTGTTGTTATTCCCCAGATGATTGTATCCCTGGGAGCTGGGCCATGGGATGCATTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTGGCCTCTATATGTGCTCTTGCGGCTGGAGTCGTTGCAGTTCTTAGATTGCCTAATCAAATAAGCAGTTCTTTCAAATCCACGGGTTTTCATTTTGGTTAG 1821 42.83 MAANPNSVSFRVPYRNLHDAEVEMVAVDEHQLHGIDLNSPSSDGCPNGSQPEHSFPSSPHIRSKPSSLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSNACCEACGNLKAAFLIAVLFLTICTLVTIYFADEVPLTAVDQPPRLSDSAPLLNGSEQNSPDILKPELNGLNGSSVDYGHHENINLKNSKAESEENQSEGYYDGPATVIVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLTDERVYDQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGARVVWAMSNFIVFACMTGTTIISLISVSHYSEGIEHIIGGNSTIKNAALAVFALLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNIPAFALASICALAAGVVAVLRLPNQISSSFKSTGFHFG* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20184545 20190732 - CsaV3_5G025170.1 Csa05g01698 530085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01698 606 SUPERFAMILY MFS general substrate transporter 53 591 IPR036259 -
Csa05g01698 606 PANTHER SUGAR TRANSPORTER 51 606 - -
Csa05g01698 606 MobiDBLite consensus disorder prediction 38 60 - -
Csa05g01698 606 CDD MFS_SLC45_SUC 71 588 - -
Csa05g01698 606 Pfam MFS/sugar transport protein 85 286 - -
Csa05g01698 606 Gene3D MFS general substrate transporter like domains 64 590 IPR036259 -
Csa05g01698 606 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 51 606 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01698 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101205348 1189.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00856 Csa-Chr2:7878961 Csa05g01698 Csa-Chr5:20184545 2.02E-40 dispersed
Csa02g02236 Csa-Chr2:20093960 Csa05g01698 Csa-Chr5:20184545 7.83E-153 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G22710 63.0 7.5e-175 610.5
Csa02g02236 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.0 1.0e-139 493.8
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G22710 65.0 1.8e-96 350.1
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G22710 52.0 3.0e-54 209.9
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.1 8.5e-176 613.6
Csa02g02236 . 21 492 Sucrose Transporter Gene Family AT2G14670 51.6 1.3e-136 483.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT2G14670 65.9 4.2e-98 355.5
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT2G14670 54.1 1.9e-50 197.2
Csa02g00853 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.1 2.0e-147 519.2
Csa02g02236 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 7.3e-113 404.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G66570 64.7 9.6e-97 350.9
Csa05g01698 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 4.6e-187 651.0
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT5G06170 61.3 3.7e-163 571.6
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 2.4e-130 462.6
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT5G06170 65.1 6.7e-96 348.2
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.9 1.8e-173 605.9
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.9 2.4e-133 472.6
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT5G43610 65.5 3.0e-96 349.4
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT5G43610 54.1 5.6e-50 195.7
Csa02g02236 . 14 499 Sucrose Transporter Gene Family AT1G09960 70.6 1.9e-202 702.2
Csa02g00853 . 8 481 Sucrose Transporter Gene Family AT1G09960 51.5 3.5e-132 468.8
Csa02g00855 . 8 231 Sucrose Transporter Gene Family AT1G09960 61.1 2.9e-78 289.7
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G71880 61.7 9.9e-167 583.6
Csa02g02236 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 1.4e-133 473.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G71880 61.5 4.0e-91 332.4
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71880 54.5 7.8e-55 211.8
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT1G71890 60.7 1.6e-164 576.2
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT1G71890 62.3 1.8e-91 333.6
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71890 50.4 6.8e-51 198.7
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G71880 61.7 9.9e-167 583.6
Csa02g02236 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 1.4e-133 473.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G71880 61.5 4.0e-91 332.4
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71880 54.5 7.8e-55 211.8
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT1G22710 63.0 7.5e-175 610.5
Csa02g02236 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.0 1.0e-139 493.8
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G22710 65.0 1.8e-96 350.1
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G22710 52.0 3.0e-54 209.9
Csa05g01698 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 4.6e-187 651.0
Csa02g02236 . 14 499 Sucrose Transporter Gene Family AT1G09960 70.6 1.9e-202 702.2
Csa02g00853 . 8 481 Sucrose Transporter Gene Family AT1G09960 51.5 3.5e-132 468.8
Csa02g00855 . 8 231 Sucrose Transporter Gene Family AT1G09960 61.1 2.9e-78 289.7
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT1G71890 60.7 1.6e-164 576.2
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT1G71890 62.3 1.8e-91 333.6
Csa02g00856 . 1 223 Sucrose Transporter Gene Family AT1G71890 50.4 6.8e-51 198.7
Csa02g00853 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.9 1.8e-173 605.9
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.9 2.4e-133 472.6
Csa02g00855 . 17 264 Sucrose Transporter Gene Family AT5G43610 65.5 3.0e-96 349.4
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT5G43610 54.1 5.6e-50 195.7
Csa02g00853 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.1 2.0e-147 519.2
Csa02g02236 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 7.3e-113 404.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT1G66570 64.7 9.6e-97 350.9
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.1 8.5e-176 613.6
Csa02g02236 . 21 492 Sucrose Transporter Gene Family AT2G14670 51.6 1.3e-136 483.4
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT2G14670 65.9 4.2e-98 355.5
Csa02g00856 . 1 206 Sucrose Transporter Gene Family AT2G14670 54.1 1.9e-50 197.2
Csa02g00853 . 14 479 Sucrose Transporter Gene Family AT5G06170 61.3 3.7e-163 571.6
Csa02g02236 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 2.4e-130 462.6
Csa02g00855 . 14 264 Sucrose Transporter Gene Family AT5G06170 65.1 6.7e-96 348.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41