Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01723 ATGTCAGCAGCTTCAAGGGGTAGAGTTACCATTACACTTGGCCGTAGCGGACAGGTAGTAAAAAAGGCCGGCCCAGGGACTGATGTTTCCGTCTCTGATTCTTGGCCTGTATCTGGAACCAAGCGGTCTGTAAGAGATAGGTTGGGAAGTAGCTCTGATAGTGATCTGTTTTATGGAAGCCAACTCAATAACAAACGATTTCGAGGAGATGATGGGATGTCAAATTGGAGTTCTAATGGCGGGTTAGATGTGCCACATATTGGTAAAGACGACCTTCGGTATAAACTCTTGCAAAAAGGTGCATTCAAACGTGCTCAAAGCGATAATAAGAAGTGTTTAGATCTTCGGGAGAAGCTACCTAAGGCAGATCAAGCTCCTATACGACATCGTAATTCACCATTGCACAATACAAATATCTTACGCCGAACCCCTTCAACCAGAAGTGCAGATGACCTACCTCAGAAGGACTCGTTAGGCAGTTCTTATTCCCCATGGACCATGGATAATTTGAGACAAAGATCACCCGCTAGAATTGTAGAATCCTCAAGGCACTACTCTCTACAAAGAGATGATGAGAAACTTCAGAGAAGGCCAGCTAACCTGTCATTTGAGAATGCAAGATCAGTGGGGTATGTAGCCAAAGATGTTCACAATACTTCAGGTTCTGTTAGTACTGCAACGTATGTGACGAACTCTCTATTGCCCCCTACATCTGCAAAGCCTGTGGCACCGATTGTACCTTTACATCCTCCCCCAAGTGGCATTGCACACAAAACTCTCTATCCCGGCAACGAACTTCAAACTATAGATGGCTTGTTGCAGTCTCTAGAATTGGGAAAATATTCCATTCTTTTTAAGGCTGAGGAAGTTGATATGACTGCCTTGAAGCAAATGGGGGAGAATGATCTCAAAGAGCTTGGAATACCTATGGGACCTAGAAAGAAAATACTTCTTGCTATTGCTCCACGATCCAAGCGACAACCTTGA 987 44.28 MSAASRGRVTITLGRSGQVVKKAGPGTDVSVSDSWPVSGTKRSVRDRLGSSSDSDLFYGSQLNNKRFRGDDGMSNWSSNGGLDVPHIGKDDLRYKLLQKGAFKRAQSDNKKCLDLREKLPKADQAPIRHRNSPLHNTNILRRTPSTRSADDLPQKDSLGSSYSPWTMDNLRQRSPARIVESSRHYSLQRDDEKLQRRPANLSFENARSVGYVAKDVHNTSGSVSTATYVTNSLLPPTSAKPVAPIVPLHPPPSGIAHKTLYPGNELQTIDGLLQSLELGKYSILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLAIAPRSKRQP* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20535180 20550537 - CsaV3_5G025420.1 Csa05g01723 530110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01723 328 MobiDBLite consensus disorder prediction 120 196 - -
Csa05g01723 328 Gene3D - 265 328 IPR013761 -
Csa05g01723 328 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 327 - -
Csa05g01723 328 PANTHER OSJNBA0060P14.15 PROTEIN 1 327 - -
Csa05g01723 328 MobiDBLite consensus disorder prediction 130 181 - -
Csa05g01723 328 MobiDBLite consensus disorder prediction 22 52 - -
Csa05g01723 328 Pfam SAM domain (Sterile alpha motif) 268 320 IPR001660 GO:0005515
Csa05g01723 328 SMART SAM_4 261 326 IPR001660 GO:0005515
Csa05g01723 328 SUPERFAMILY SAM/Pointed domain 265 321 IPR013761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01723 - - - csv:101207992 640.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01723 Csa-Chr5:20535180 Csa05g02928 Csa-Chr5:29707025 2.90E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0641 . . . . . . . Bda07g01570 . Bpe11g01738 . . . . Cmo04g02857 . . . . . Cpe13g00922 Cpe07g00639 . . . . . . . . . . . . . . . Csa05g01723 Chy09g00662 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004993 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 5 3 41