Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01725 ATGAAATTCCTCCTTATTACTTCACTCTCTCTATTGCTTTTTCTCAATCCCATCTCTGCCCATATCTTCCCCAACGTCTCTTCAATCCCATCTTGGCTTAACAAAACCACTTGTGCTTGGGACCAATTCAAGAAACTCAAAGGCTGCCGCCCTGGTGATCGCTTCAATGGCCTCTCTAATCTCAAAACTTACCTCAATCGATTTGGCTACATTCCCTCTTCTCCTAATTTCACCGATCTCTTCGATCCTCTCCTTCAATCTGCCCTTAAAACCTACCAAACCAATTTCAATCTTAACGCCACTGGCCTTCTCGACGACCAAACTCTCGCTCAGATTCAGCTTCCCCGATGCGGAATCCCCGATATAATCAATAATTCCACTTCTATGAATTCCGGCCAACCAACCGGACGACAGTCCCCCCATTTTCACTCTGTTTCTCATTACTCTTTCTTCCCCGGCCGCCCCATCTGGCCTGCCCACCGTCGTGATTTGACCTACGCTTTTGCGCCCGAGAATCCTCTTTCCAACGAGGTTAAAGCGGTTTTTGCTAGGGCGTTTGCTCGTTGGGCGGCTGTTACGCCTTTGACATTCTCGGCTGTAGAATCGTTTCGGTCGGCGGATATCCGGATTGGATTCTACGCTGGGGATCACGGCGATGGGGAGCCGTTCGATGGGGTTTTAGGGACTTTGGCTCACGCGTTTTCGCCGCCGAGTGGACATTTTCATTTGGATGGGGATGAGAGTTGGGTGGTTTCCGGTGACTTAAGATCGGCTCCTCTGGCAGCGATCGATTTGGAATCGGTGGCGGTTCATGAGATTGGGCATTTATTAGGGCTTGGTCACTCGTCTGTTGAGGAATCCATTATGTTTCCGACGATCACTTCGAGGACGAGGAAGGTGGATCTGGCTGCCGACGATATCAATGGAATTCAAGAACTGTATGGCGGAAACCCCAACGGAAACCTCTCGCCACCATCGAGTAGTACGACGCCTTCCGTACAGGAGAGAGAGATGTCAAGAAACGGAGCTGCTCCGAGGCCGTTGAGGTTCTGGTGGAGCCCAGTTTTAATCGCAGCCGTTGAACTTTTCTTGATGAGATAG 1101 50.23 MKFLLITSLSLLLFLNPISAHIFPNVSSIPSWLNKTTCAWDQFKKLKGCRPGDRFNGLSNLKTYLNRFGYIPSSPNFTDLFDPLLQSALKTYQTNFNLNATGLLDDQTLAQIQLPRCGIPDIINNSTSMNSGQPTGRQSPHFHSVSHYSFFPGRPIWPAHRRDLTYAFAPENPLSNEVKAVFARAFARWAAVTPLTFSAVESFRSADIRIGFYAGDHGDGEPFDGVLGTLAHAFSPPSGHFHLDGDESWVVSGDLRSAPLAAIDLESVAVHEIGHLLGLGHSSVEESIMFPTITSRTRKVDLAADDINGIQELYGGNPNGNLSPPSSSTTPSVQEREMSRNGAAPRPLRFWWSPVLIAAVELFLMR* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20564459 20566625 + CsaV3_5G025440.1 Csa05g01725 530112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01725 366 Pfam Putative peptidoglycan binding domain 58 112 IPR002477 -
Csa05g01725 366 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 150 318 - -
Csa05g01725 366 SUPERFAMILY PGBD-like 49 122 IPR036365 -
Csa05g01725 366 ProSitePatterns Matrixins cysteine switch. 115 122 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Csa05g01725 366 MobiDBLite consensus disorder prediction 314 340 - -
Csa05g01725 366 SMART col_5 153 316 IPR006026 GO:0006508|GO:0008237|GO:0008270
Csa05g01725 366 CDD ZnMc_MMP 160 315 IPR033739 GO:0008237|GO:0008270
Csa05g01725 366 PANTHER MATRIX METALLOPROTEINASE 16 341 - -
Csa05g01725 366 PRINTS Matrixin signature 112 125 IPR021190 GO:0004222|GO:0006508|GO:0008270
Csa05g01725 366 PRINTS Matrixin signature 182 197 IPR021190 GO:0004222|GO:0006508|GO:0008270
Csa05g01725 366 PRINTS Matrixin signature 206 234 IPR021190 GO:0004222|GO:0006508|GO:0008270
Csa05g01725 366 PRINTS Matrixin signature 268 293 IPR021190 GO:0004222|GO:0006508|GO:0008270
Csa05g01725 366 PRINTS Matrixin signature 302 315 IPR021190 GO:0004222|GO:0006508|GO:0008270
Csa05g01725 366 MobiDBLite consensus disorder prediction 314 337 - -
Csa05g01725 366 PANTHER MATRIX METALLOPROTEINASE 16 341 - -
Csa05g01725 366 Gene3D Collagenase (Catalytic Domain) 48 321 IPR024079 GO:0008237
Csa05g01725 366 Pfam Matrixin 160 315 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01725 - - - csv:101208235 701.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00426 Csa-Chr5:2824442 Csa05g01725 Csa-Chr5:20564459 4.07E-84 dispersed
Csa05g01725 Csa-Chr5:20564459 Csa05g02937 Csa-Chr5:29747736 4.45E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g791 . . Bda01g02239 Bda11g01250 Bpe13g00477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0625 . . . . . . . Bda11g01250 . . Bma01g00069 Bma06g00637 . Cmo04g02859 . . . . . Cpe13g00923 . . . . . . . . . . . . . . . . Csa05g01725 Chy09g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006919 2 1 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 36