Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01726 ATGGCGATTCCCGCCATTAACGTCTACTCCATCATTTCTCTTCAACATCTCTGCCCCCCGCCGTTATCTTATCCTTTCCCCTCCTTCCTAACCCCTCACTATTCCGCCTCCAGGTTTTGCCCCCATAAACCTCTTGCCTTCTACTCTACCCGTCCAGTTCCATTTCGGCCTTCCTTTCACTCTCCGAGGTCCATTTTCTCTGAAAAATCCCAACTCTCCGATGTTGACGAAGATGAGGATGAAGACGAGGATGAAGACGACGAAGACGACGTGGCAGCCGAGGAGTACGACAGCGATGCATTGGGAGGATTCGAGCAAAGCTACGATGAAGTGGAATTGTCGATGGACACTTCAGAAATTTCTAATGCATCCCAGGAGTTCAAATGGCAGAGAGTGGAAAAGCTTCTCGGTGAAGTTAGAGAGTTTGGAGAAGGAATTATCGATGTCGATGAGCTTGCTTCAGTTTATAATTTCCGAATCGATAAGTTTCAGCGGCTAGCCGTACAAGCATTCTTGAGAGGATCATCGGTAGTGGTATCGGCTCCTACCAGCAGTGGAAAGACTTTGATTGCGGAGGCTGCGGCCGTTGCCACCGTAGCCAGGAAGAGACGATTGTTTTACACGACTCCACTGAAAGCATTGTCAAACCAGAAATTTCGCGAGTTTCGTGAGACGTTTGGAGACAGCAACGTTGGGCTTCTAACTGGAGATTCTGCCGTTAATAAAGATGCACCGGTTTTAATCATGACTACAGAAATTTTGCGCAACATGTTGTATCAGAGTGTTGGAATGGCCACATCTGCTAGTGGACTGTTTCATGTGGATGTTATTGTTTTGGATGAAGTTCATTACCTTAGTGATATTTCTCGGGGCACAGTGTGGGAAGAGATTGTTATTTATTGCCCAAAAGAAGTGCAGCTTATTTGTCTATCAGCAACGGTTGCAAATCCAGATGAGCTGGCTGGCTGGATCGGTCAGATCCATGGGAAAACTGAGTTAGTAACATCATCAAAGCGTCCAGTACCATTGACTTGGCATTTCTCTACGAAGACCTCTTTACTTCCTCTCCTTGATGAGAAAGGAGCGCGCATGAATAGGAAGCTGTCGCTCAATTATCTTCAGCTTAATGCTTCAGGAGATAAATTTTCTAAGGATGATGGATCAAGAAGAAGAACCCCAAAAAGGCGTGGGAATGAGATCAGCTATGACAATATTGGCAGCATGTCTAGACAAGCTACACTTTCAAAGAATGATATAAACTCAATCCGCCGTTCAAATGTTCCTCAGGTGATTGATACATTGTGGCAACTTAAGTCAAAAGATATGCTGCCTGCAGTTTGGTTTATATTTAGTAGGAAAGGATGTGATGCAGCTGTTCAGTACATCGATAGCAGCAATCTCTTAGATGATTGTGAGAGGAGTGAAGTTGAACTTGCATTGAGGAAATTTCGTATTCAATTTCCAGATGCTGTCCGGGAATCGGCTATCAAAGGACTTCTGCAAGGAGTTGCTGCACATCACGCTGGCTGCCTGCCTCTCTGGAAGTCATTCATTGAAGAGCTGTTTCAGAGGGGACTTGTGAAGGTCGTCTTTGCAACAGAAACATTAGCTGCTGGAATCAACATGCCAGCTAGGACAGCAGTTATTGCATCCCTGAGTAAAAGAAGCAATAATGGTCGCACCCATTTAAGCCCAAATGAACTGCTTCAAATGGCTGGGCGTGCTGGGCGTCGAGGCATTGATAAAAAAGGTCATGTGGTGCTTCTTCAAACTCCATATGAAGGTGCTGAAGAATGCTGCAAGCTCCTATTTGCTGGCATTGAACCACTTGTTTCTCAGTTTACGGCTTCATATGGAATGGTACTGAATCTTCTCGCAGGTGCAAAGGTTACTCATACAAGTGAAATGGATGAGACGAAAGCTTTCCAAGCTTGGCGAACGCTAGAAGAAGCTAGGAAGTTAGTTGAACAAAGTTTTGGAAACTATGTTGGGAGCAACGTCATGCTTGCAGCAAAGGAGGAGCTTGTCAAAATAGAAAAAGAGATTGAAATGCTCAATTTAGAAATAACTGATGAAGCCATTGATAGAAAAAGCAGGAAGTTCTTGTCAGACATGGCATATAATGAGATAGCAGAGCTGCAGGAGGAACTACGATTAGAGAAACGTCACAGGACAGAACTGCGAAAAGAGATGGAATCACAAAGAATTTGTGCCCTCAATTCTCTGTTACGAAATCTAGGAGATGGACATTTGCCATTTTTGTGTTTGCAATACAAAGATTCTGAAGGAGTCCAACATTCAATTCCTACAGTTCTCCTTGGAAACATGGACTCATCAAAACTTGGTAACATGTTTCCTGCTGATAGTTCTTTGAGTGGTGCAGAATCAAATCTTGGTATCACCTTGGAGCCAGGTGCTGAATCATCTTATTATGTGGCACTAGGTTCAGATAACTCGTGGTACCTATTTACTGAGAAATGGATCAAAACAGTTTATAAAACTGGCTTTCCTAATGTTGCTTTATCTAAAGGGGATGCTTTACCTCGAGAGATTATGAGGAGTCTTCTTGATAAAGAGGGAATGAAGTGGGAGAAGCTTGCTGATTCTGAGCTTGGCAGTTTAGCATGTATGGAAGGATCTCTAGAAACATGGTCATGGAGTTTAAACGTGCCAGTTCTGAATAGTCTTTCTGAAAATGACGAACTCTTGCAAATGTCTCAATCGTACATGGAGTCTTTAGATAGGTACAAGGTGCAAAGAAATAAAGTTGCACGATTGAAGAAAAGGATTTCTAAAACAGAAGGATTCAGAGAGTACAAGAAGATTTTAGATATGGCCAATCTTATAGAGGACAAGATTAGACAATTAAAGACTAGGTATAAGCGGCTAAGTAATCGAATTCAGCAAATCGAACCATCAGGGTGGAAAGAGTTTTTGCAAATCAGCAATGTGATACATGAAATCAGAGCACTTGATATAAATACTCATGTCATGTTTCCACTTGGAGAAACCGCAGCTGCTATACGAGGTGAAAATGAGCTGTGGATTGCCATGGTTCTAAGAAACAAATTCTTAGTACAACTAAAGCCTACGGAGCTTGCTGCTGTTTGTGCAAGTTTAGTTTCTGAAGGCATCAAAGTTCGCCCCGGAAGGAATAACAGTTACATATTTGAACCATCAAGAACAGTAATCAATATGATCAATTTTCTAGAAGAGCAGAGGAATTCTCTAGAAGATCTTCAAGAAAAGCATGGAGTGAACATATCATGCTGTTTGGACAGCCAATTTTCAGGAATGGTTGAGGCTTGGGCATCTGGGTTGACTTGGAGAGAGATAATGATGGATTGTGCAATGGATGAGGGAGATCTGGCGCGCCTCTTGCGACGAACAATCGACTTGTTGGCTCAGATTCCAAAATTGCCTGATATCGATCCATCTTTGCAACGCAATGCATCCACTGCTTCTGATGTCATGAATCGTCCACCTATAAGCGAATTGGCTGGATAA 3507 42.94 MAIPAINVYSIISLQHLCPPPLSYPFPSFLTPHYSASRFCPHKPLAFYSTRPVPFRPSFHSPRSIFSEKSQLSDVDEDEDEDEDEDDEDDVAAEEYDSDALGGFEQSYDEVELSMDTSEISNASQEFKWQRVEKLLGEVREFGEGIIDVDELASVYNFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARKRRLFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAPVLIMTTEILRNMLYQSVGMATSASGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGARMNRKLSLNYLQLNASGDKFSKDDGSRRRTPKRRGNEISYDNIGSMSRQATLSKNDINSIRRSNVPQVIDTLWQLKSKDMLPAVWFIFSRKGCDAAVQYIDSSNLLDDCERSEVELALRKFRIQFPDAVRESAIKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVIASLSKRSNNGRTHLSPNELLQMAGRAGRRGIDKKGHVVLLQTPYEGAEECCKLLFAGIEPLVSQFTASYGMVLNLLAGAKVTHTSEMDETKAFQAWRTLEEARKLVEQSFGNYVGSNVMLAAKEELVKIEKEIEMLNLEITDEAIDRKSRKFLSDMAYNEIAELQEELRLEKRHRTELRKEMESQRICALNSLLRNLGDGHLPFLCLQYKDSEGVQHSIPTVLLGNMDSSKLGNMFPADSSLSGAESNLGITLEPGAESSYYVALGSDNSWYLFTEKWIKTVYKTGFPNVALSKGDALPREIMRSLLDKEGMKWEKLADSELGSLACMEGSLETWSWSLNVPVLNSLSENDELLQMSQSYMESLDRYKVQRNKVARLKKRISKTEGFREYKKILDMANLIEDKIRQLKTRYKRLSNRIQQIEPSGWKEFLQISNVIHEIRALDINTHVMFPLGETAAAIRGENELWIAMVLRNKFLVQLKPTELAAVCASLVSEGIKVRPGRNNSYIFEPSRTVINMINFLEEQRNSLEDLQEKHGVNISCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPSLQRNASTASDVMNRPPISELAG* 1169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20573797 20586104 + CsaV3_5G025450.1 Csa05g01726 530113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01726 1168 Coils Coil 946 966 - -
Csa05g01726 1168 MobiDBLite consensus disorder prediction 1145 1168 - -
Csa05g01726 1168 Gene3D - 942 1160 - -
Csa05g01726 1168 Gene3D - 120 339 IPR027417 -
Csa05g01726 1168 SMART helicmild6 493 579 IPR001650 -
Csa05g01726 1168 MobiDBLite consensus disorder prediction 68 96 - -
Csa05g01726 1168 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 47 1164 - -
Csa05g01726 1168 Gene3D - 340 610 IPR027417 -
Csa05g01726 1168 Coils Coil 703 730 - -
Csa05g01726 1168 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 47 1164 - -
Csa05g01726 1168 Coils Coil 668 688 - -
Csa05g01726 1168 Pfam DEAD/DEAH box helicase 163 315 IPR011545 GO:0003676|GO:0005524
Csa05g01726 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 592 IPR027417 -
Csa05g01726 1168 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 332 IPR014001 -
Csa05g01726 1168 MobiDBLite consensus disorder prediction 73 96 - -
Csa05g01726 1168 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 426 625 IPR001650 -
Csa05g01726 1168 SMART ultradead3 156 346 IPR014001 -
Csa05g01726 1168 Pfam DSHCT (NUC185) domain 998 1163 IPR012961 -
Csa05g01726 1168 CDD SF2_C_Ski2 423 591 - -
Csa05g01726 1168 SMART DSHCT_2 993 1167 IPR012961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01726 K26077 ISE2, EMB25; ATP-dependent RNA helicase ISE2 [EC:3.6.4.13] - csv:101218385 2242.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01726 Csa-Chr5:20573797 Csa06g00931 Csa-Chr6:7468304 6.19E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012724 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28