Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01727 ATGGAATCACAGCTCCAGCGTCCTGTATTTCCCTCTAGAGGAGAATCAACTGTGCAGAGCCAGATGGTAGGAGGTGGGAGTTTGCAAAAACTAACGACGAATGATGCCCTAGAATATCTTAAGAATGTGAAGGACATCTTCCGAGACAAGAAGGAAAAATATGAAGATTTTCTTGAAGTCATGAAAGAATTCAAGGCCCAAAGAATTGATACTGTCGGTGTCATAGCAAGAGTGAAGCAGCTATTCAAAGGTCATCGTGACCTGATTTTGGGCTTTAATACGTTTTTGCCAAAAGGATATGCAATAACTTGTCCTCTTGAGGATGAAACACCTCCTCAAAAGAAGAAGCCTGTTCAATTTGAAGAAGCTATCAACTTCGTCGGTAAGATTAAGACACGGTTTGAAGGTGATAACCATGTATACAAGTCATTTTTAGAAATTTTGAATTTGTACAGGAAGGAAAACAAGTCTATAAGTGAGGTCTACCGGGAGGTTTCTGCACTGCTGCAAGACCACCCAGACCTTCTTAGGGAGTTTGTTCATTTTCTGCCTGATGCTTCAGCCACAACCTCAAATAATCACGTGTCATCTATGAGGAATTCTGTCCTTCGTGATAGAAATTCTTCCATACCACCTATTCAACAAAAGGAGAGGGCAACGACTCCACATACTGACCATGACATTGGTGTCAATCATCCTGATTGTGACCATGCTAGAGTTACTATCAAAGGCGATAAAGAGAAATGTCAGCACAGCGAAAAAGAGAAGGATAGGAGAGACAACACAGATAGTATGGAACAGTGTAGGGAAATTGATAAAAAATTTATCGAGCATGATAGCAGTAAGGACATCAGCATGCAAAGTTTTTCACAGAAGAGGAAATCTTCTGTTAGAGTTGAAGATACGACTTCAGTGAAATGGCATCTAAGTGGGGAAGGTATGTCTTTTATTGAGAAGGTAAGGCTGAAGTTACCAAATGTTGATGTTTACCAAGAATTTGTGAAATGTCTTGACATATTCGACAAGGAAATAATCACTCGATCAGAACTGCATTCTTTGGTGAGAGATTTACTTGGAAGATATCCAGACCTTATGGATGCTTTTGGTGAATTTATGATACTTTGTGACAGAACTGATGGGCTTCTAGCAGATATTATGAGTAAAAAATCCTTGTGGAATGAAGGTAGTTTACCAAGATTAGCGAAGGTAGAAGAGAAGGACAGAAATCGAGATCATGAAAGGGAGGATGGTTTTAAAGACCGTGACCATGGAAATCGAGAAAGGGATAGACTTGAAAAAAGTGTTGCTTTTGGCCATAATGATGTTGGTAGCCACAAGATGTCTTTATTTTCTAGTAAGGACAAATATTTTGGGAAACCTATCAATGAACTTGACCTCTCTAACTGTGAGCGGTGTACTCCCAGTTACCGTCTTCTCCCAAAGAATTATCCAATACCCTTTGCTAGCCAGAGAACAGAAATTGGTGATCAAGTTTTAAATGATCATTGGGTTTCTGTCACTTCAGGAAGTGAGGATTACTCTTTTAAGCACATGCGCAAAAATCAGTATGAAGAAAGCCTCTTTCGTTGTGAGGATGACAGGTTTGAATTGGATATGTTGTTAGAGTCTGTTAATGTAACATCCAAGCGGGTTGAAGACTTATTAGAAAAAATCAACTTGTCAGACAGTCCAGTCCATATTGAAGATCATTTAACAGCACTTAATTTGAGATGCATTGAACGCTTATATGGTGATCATGGCCTTGATGTGATGGATGTGTTAAGGAAGAATGCTCCACTTTCTCTCCCTGTTATATTAACCCGCTTGAAGCAAAAACAAGAAGAGTGGGCACGGTGTCGATCCGATTTTAATAAGGTTTGGGCTGAAATATATTTCAAGAATTATCAGAAATCTCTTGATCATCGTAGCTTCTATTTCAAGCAGCAGGATACAAAGAGCTTAAGCACAAAAGCTTTGTTATCAGAGATCAAGGAAATTAATGAAAAGAAGCATAAGGAAGAGGATGTACTGCTCACTATTACTGCAGAAAATAAACGACCTATAATTCCAAATTTGGAATTTGACTACCCTGATCAAGATATTCATGAAGATCTCTATCATCTAATTAAATATTCCTGTAGAGAACTATGCTCCACAGATCAGTCTGATAAAGCTATGAAAATTTGGACAACCTTCCTGGAGCCCATGCTTGGTATTGCTTCACGGCCCTTGAGTTCCGAGGTTTCCAAAGAAATCATTAGAGAAAATAATTTTGCAGTTAGAGGTACTGCAATTGGTATGGTAGGGGTTAGCAGTAGCCATACTGTTGGAGGTGATGAGTCTAAGCTGCGAGATCCTCCCAGAATTGAAGTAGGAGGTGTTCAACCTAAACAATCAAGCCCTTGCAGGGTTTGGCCCATGAACGGAGATTCTTGTATTGAAGAAAATAGTTTTCACAAAGCAAATCGTGTTGACAGCAAGGTGGATAGTCTCCGTAAATTGCAGTTCAACGAAAATCAAGACGATTCTAATGAGAGGTTGGTAAAATCCAATGTGTTGGTTAGCTCTGTGCTCGAACAAGGGAAGGGGAAAGTAACTATAGAAACTGCATCAGGGCTGCGCTCTACTCCATCCAGAACTTGGAATGGTGGTGTTGATAAAGGGCTTGAGTTAGCATCATCACAGGGGGGTTGTTCATCAAGGCCACTTTTGTCTAATGGTGTGATGGCAGAAGGCTCAAATGCTCCTAGTTTCAATGAAAAATGTGATGGGCACTCAAAGATAGAGAGAGAAGAGGGTGAACTATCACCAACTGGAGAATTAGAAGATAACTTTTCAAATTATCAAGAAGGTAGTCTTGATAAAGCAAAAGACAGTGCTGCAGGCAGGCAATGTTTCAGAGCACACACAGACAAGATATCTTGCAGGGATGTGACAAGAGAAACTCATATAGATGCTGATGATGAAGGGGAGGAAAGTGCTCGGCGGTCATCAGAAGACAGCGAAAATGGTTCTGAGAATTGTGATATCTCTGGAACTGAGTCTATTGATGGAGAGGACAGTACTCGTGAAGGGCAGGAAGACAGGGGTCATAATGACCATCATAGTAAGGTTGAGAGTGAAGGGGAGGCTGAAGGAATGGATGATGCCCATAGTGCTGAGGGTGATGGAACAGTGTTACCCTTTTCGGAACGTTTTCTTCTCAACGTGAAGCCGCTTGCTAAGTATATCCCATTGGCATTACGGGATGATAAAAAGAACTCCCGGATTTTTTATGGAAATGACTCCTTTTATGTTCTTTTTAGACTTCACCGAACATTGTATGAGCGGATACGATCAGCAAAGATTAATTCATCATTTGGTGAGAGGAAGTGGAGAGCTTCAAATGATACTAGCCCTAACGATCTGTATTCCAGATTTATGAGTGCACTTCGTAGTTTACTTGATGGCTCCTCTGATAATATGAAGTTTGAGGATGACTGCCGATCTATTATTGGAACCCAGTCTTATGTTCTATTCACTTTGGATAAGTTGATTTATAAACTCGTTAAACAGCTTCAAACAGTTGCTACTGATGAGATGGAGTCCAAGCTTCTTCAATTATATGCCTATGAGAATTCAAGAATGCATGGAAAGGATGAAGACACAGTTTATCATGATAATGCCCGTGTGCTTCTTCATGATGATAGCATATACCGAATTGAATGTTCATGTAGTCCAGGTCATCTATCCATTCAGCTAATGGAATTTGGCAATGATAAGCCTGAAGTGACGGCTGTTTCAATGGATCCTAATTTCTCAGCTTACCTGCACAATGATTTCCTCTCCATTCTTCCGGATGACAAAGAGCAGTCTGGAATCTACTTACACAGAAATAAGTGCAAGCATGCCTGCAGTGATGAAATTTCTGCTGCATGCGAGGCCATGGAAGGACTTAAGGTTGTTAATGGTCTGGAGTGTAAAATCACATGCAATTCATCGAAGGTCTCCTACGTTTTAGATACAGAAGACTATTTGTTTCGCACAAAAGGCAGAAGAAGAAGTTTGCATAGAAGTGGTTCGTGCCGTCACCACCAGTCAAGGTCTTCAAGTGGAAGCTCAAGCAGAGGACAACGATATCAACGATGGCTGTCGAGCTCATGA 4143 40.53 MESQLQRPVFPSRGESTVQSQMVGGGSLQKLTTNDALEYLKNVKDIFRDKKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGHRDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFLEILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNHVSSMRNSVLRDRNSSIPPIQQKERATTPHTDHDIGVNHPDCDHARVTIKGDKEKCQHSEKEKDRRDNTDSMEQCREIDKKFIEHDSSKDISMQSFSQKRKSSVRVEDTTSVKWHLSGEGMSFIEKVRLKLPNVDVYQEFVKCLDIFDKEIITRSELHSLVRDLLGRYPDLMDAFGEFMILCDRTDGLLADIMSKKSLWNEGSLPRLAKVEEKDRNRDHEREDGFKDRDHGNRERDRLEKSVAFGHNDVGSHKMSLFSSKDKYFGKPINELDLSNCERCTPSYRLLPKNYPIPFASQRTEIGDQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTSKRVEDLLEKINLSDSPVHIEDHLTALNLRCIERLYGDHGLDVMDVLRKNAPLSLPVILTRLKQKQEEWARCRSDFNKVWAEIYFKNYQKSLDHRSFYFKQQDTKSLSTKALLSEIKEINEKKHKEEDVLLTITAENKRPIIPNLEFDYPDQDIHEDLYHLIKYSCRELCSTDQSDKAMKIWTTFLEPMLGIASRPLSSEVSKEIIRENNFAVRGTAIGMVGVSSSHTVGGDESKLRDPPRIEVGGVQPKQSSPCRVWPMNGDSCIEENSFHKANRVDSKVDSLRKLQFNENQDDSNERLVKSNVLVSSVLEQGKGKVTIETASGLRSTPSRTWNGGVDKGLELASSQGGCSSRPLLSNGVMAEGSNAPSFNEKCDGHSKIEREEGELSPTGELEDNFSNYQEGSLDKAKDSAAGRQCFRAHTDKISCRDVTRETHIDADDEGEESARRSSEDSENGSENCDISGTESIDGEDSTREGQEDRGHNDHHSKVESEGEAEGMDDAHSAEGDGTVLPFSERFLLNVKPLAKYIPLALRDDKKNSRIFYGNDSFYVLFRLHRTLYERIRSAKINSSFGERKWRASNDTSPNDLYSRFMSALRSLLDGSSDNMKFEDDCRSIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMESKLLQLYAYENSRMHGKDEDTVYHDNARVLLHDDSIYRIECSCSPGHLSIQLMEFGNDKPEVTAVSMDPNFSAYLHNDFLSILPDDKEQSGIYLHRNKCKHACSDEISAACEAMEGLKVVNGLECKITCNSSKVSYVLDTEDYLFRTKGRRRSLHRSGSCRHHQSRSSSGSSSRGQRYQRWLSSS* 1381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20596227 20606916 - CsaV3_5G025460.1 Csa05g01727 530114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01727 1380 MobiDBLite consensus disorder prediction 219 266 - -
Csa05g01727 1380 Gene3D Paired amphipathic helix 114 187 IPR036600 GO:0006355
Csa05g01727 1380 SUPERFAMILY PAH2 domain 29 98 IPR036600 GO:0006355
Csa05g01727 1380 MobiDBLite consensus disorder prediction 980 1003 - -
Csa05g01727 1380 SUPERFAMILY PAH2 domain 312 372 IPR036600 GO:0006355
Csa05g01727 1380 Gene3D Paired amphipathic helix 305 376 IPR036600 GO:0006355
Csa05g01727 1380 MobiDBLite consensus disorder prediction 895 913 - -
Csa05g01727 1380 Pfam C-terminal domain of Sin3a protein 1091 1339 IPR031693 -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 1358 1380 - -
Csa05g01727 1380 Gene3D Paired amphipathic helix 35 97 IPR036600 GO:0006355
Csa05g01727 1380 SMART hdac_interact2seq4b 468 572 IPR013194 -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 1016 1052 - -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 895 946 - -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 771 800 - -
Csa05g01727 1380 Pfam Sin3 family co-repressor 470 559 IPR013194 -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 1 21 - -
Csa05g01727 1380 Pfam Paired amphipathic helix repeat 328 371 IPR003822 GO:0006355
Csa05g01727 1380 Pfam Paired amphipathic helix repeat 52 96 IPR003822 GO:0006355
Csa05g01727 1380 Pfam Paired amphipathic helix repeat 139 183 IPR003822 GO:0006355
Csa05g01727 1380 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 5 1358 - -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 190 266 - -
Csa05g01727 1380 ProSiteProfiles PAH domain profile. 116 186 IPR003822 GO:0006355
Csa05g01727 1380 PANTHER SIN3B-RELATED 5 1358 IPR039774 GO:0003714
Csa05g01727 1380 MobiDBLite consensus disorder prediction 190 218 - -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 1349 1380 - -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 403 429 - -
Csa05g01727 1380 MobiDBLite consensus disorder prediction 922 937 - -
Csa05g01727 1380 ProSiteProfiles PAH domain profile. 29 99 IPR003822 GO:0006355
Csa05g01727 1380 ProSiteProfiles PAH domain profile. 305 375 IPR003822 GO:0006355
Csa05g01727 1380 MobiDBLite consensus disorder prediction 980 1055 - -
Csa05g01727 1380 SUPERFAMILY PAH2 domain 113 185 IPR036600 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01727 K11644 SIN3A; paired amphipathic helix protein Sin3a - csv:101208475 2723.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa05g02381 Csa05g01727 CCT
Csa05g02381 Csa05g01727 ECH
Csa05g01727 Csa05g02381 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01727 Csa-Chr5:20596227 Csa05g02381 Csa-Chr5:26005952 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012039 0 4 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31762 PF16879 Sin3a_C 7.50E-56 No_clan Csa TR