Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01731 ATGACTAACATTCACCTTGGAGAGTCCATTCATGCCTGTACTATAAAATTGGGGTCTGCAGTGAATGAATTTGTGGGGAATTCTTTACTTGTTATGTACCGCTCGTTTGACAACATGAGAAGTGCAAGACAAGTGTTCGATGAAATGCCTGAGTTAAGTGCTGTGTCATGGACGGTTATGATTTATGGGTATGCAAATATGGGTGATGTTGACACTGCAAGAGAGTTGTTTGACATGGCTACGGTTAAAGATACAGGGATATGGGGTGCTATGATATCTGGGTATGTGCAGAACAATTGCTTCAAGGAGGGGCTTCACATGTTCCGTCTGATGCAGCTGACTGAAGTAGAGCCTGATGAAGCCATAATTGTGACAATCCTTAGTGCTTGTGCTCATATGGGAGCTCTTGATACTGGGATTTGGATTCATAGGTATTTGGGTCGGCTAGGATTGCCATTAACTCTGCGAGTGAGCACTGGGCTAATAGATATGTATGCAAAATGTGGGCATTTGGACCTCGCTAAGTACCTTTTCAATGAAATGTCTCAGAGAGATAATGTTTGTTGGAACGCAATGATTTCCGGAATGGCAATGGATGGAGATGGAGAAGGTGCAATCAAACTCTTCATGGAGATGGAAAAGGCTGGAATAAAGCCTGACAACATTACTTTCATAGCCGTTTTGGCTGCTTGTAGCAACTCAGGTATGGTCGATGAAGGTATAAGGATATGGAATAGAATGTCTACAGTACACAAAATTGAGCCAAAGAGTGAACATTATGGGTGTGTAATTGACCTGCTGAGTCGAGTTGGGCGGTTTGAGGAAGCAGAGGGAGTGATTCAAAGGCTTCCTAAAACAGCCAGCCCTTCAGAGGAAGCAGTGGCTTGGAGAGCATTTCTAAGCGCTTGCTGCAAGCATGGGCAAACGCAGCAGGCAGAGGTTGCTGCTGAGAGGTTGTTCCAACTGGAAAGGCATAGTGGGGCTTATGTTTTGCTCTCAAATATGTATGCTGCTTTGGGGAAGCATGAGGATGCTAAAAGAGTGAGGAACATGATGAAGTTGAAAGGGGTTGAGAAGGTACCTGGTTGCAGCTCTATCAAAGTAAATGGGGTTGTCAATGAATTCATTGCAGGGGAAAAGACACACCGCCACATTGATAATATACACTTGGTTTTGGAAGAGTTGAATAAACAGATTGTTGAAGCTGATCTTGAAGGTATAATATCAACCGCTCACATTGGATATTGA 1248 43.59 MTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNKQIVEADLEGIISTAHIGY* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20634737 20636997 + CsaV3_5G025500.1 Csa05g01731 530118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01731 415 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 259 283 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 55 79 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 159 184 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 27 51 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 87 112 IPR002885 -
Csa05g01731 415 Coils Coil 385 405 - -
Csa05g01731 415 Gene3D Tetratricopeptide repeat domain 239 405 IPR011990 GO:0005515
Csa05g01731 415 Gene3D Tetratricopeptide repeat domain 8 141 IPR011990 GO:0005515
Csa05g01731 415 Gene3D Tetratricopeptide repeat domain 142 237 IPR011990 GO:0005515
Csa05g01731 415 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 398 - -
Csa05g01731 415 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 398 - -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 55 79 IPR002885 -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 88 120 IPR002885 -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 160 185 IPR002885 -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 222 249 IPR002885 -
Csa05g01731 415 Pfam E motif 308 366 IPR046848 -
Csa05g01731 415 SUPERFAMILY TPR-like 64 345 IPR011990 GO:0005515
Csa05g01731 415 Pfam PPR repeat family 185 232 IPR002885 -
Csa05g01731 415 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01731 - - - csv:101218858 837.025
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01731 Csa-Chr5:20634737 Csa01g02506 Csa-Chr1:22123507 4.96E-24 dispersed
Csa05g01731 Csa-Chr5:20634737 Csa01g00108 Csa-Chr1:617649 4.77E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g52 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01731 Chy09g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014116 1 1 0 1 0 1 1 1 1 1 1 1 0 0 1 1 1 2 0 1 1 1 1 0 0 1 0 1 1 1 23