Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01731 ATGACTAACATTCACCTTGGAGAGTCCATTCATGCCTGTACTATAAAATTGGGGTCTGCAGTGAATGAATTTGTGGGGAATTCTTTACTTGTTATGTACCGCTCGTTTGACAACATGAGAAGTGCAAGACAAGTGTTCGATGAAATGCCTGAGTTAAGTGCTGTGTCATGGACGGTTATGATTTATGGGTATGCAAATATGGGTGATGTTGACACTGCAAGAGAGTTGTTTGACATGGCTACGGTTAAAGATACAGGGATATGGGGTGCTATGATATCTGGGTATGTGCAGAACAATTGCTTCAAGGAGGGGCTTCACATGTTCCGTCTGATGCAGCTGACTGAAGTAGAGCCTGATGAAGCCATAATTGTGACAATCCTTAGTGCTTGTGCTCATATGGGAGCTCTTGATACTGGGATTTGGATTCATAGGTATTTGGGTCGGCTAGGATTGCCATTAACTCTGCGAGTGAGCACTGGGCTAATAGATATGTATGCAAAATGTGGGCATTTGGACCTCGCTAAGTACCTTTTCAATGAAATGTCTCAGAGAGATAATGTTTGTTGGAACGCAATGATTTCCGGAATGGCAATGGATGGAGATGGAGAAGGTGCAATCAAACTCTTCATGGAGATGGAAAAGGCTGGAATAAAGCCTGACAACATTACTTTCATAGCCGTTTTGGCTGCTTGTAGCAACTCAGGTATGGTCGATGAAGGTATAAGGATATGGAATAGAATGTCTACAGTACACAAAATTGAGCCAAAGAGTGAACATTATGGGTGTGTAATTGACCTGCTGAGTCGAGTTGGGCGGTTTGAGGAAGCAGAGGGAGTGATTCAAAGGCTTCCTAAAACAGCCAGCCCTTCAGAGGAAGCAGTGGCTTGGAGAGCATTTCTAAGCGCTTGCTGCAAGCATGGGCAAACGCAGCAGGCAGAGGTTGCTGCTGAGAGGTTGTTCCAACTGGAAAGGCATAGTGGGGCTTATGTTTTGCTCTCAAATATGTATGCTGCTTTGGGGAAGCATGAGGATGCTAAAAGAGTGAGGAACATGATGAAGTTGAAAGGGGTTGAGAAGGTACCTGGTTGCAGCTCTATCAAAGTAAATGGGGTTGTCAATGAATTCATTGCAGGGGAAAAGACACACCGCCACATTGATAATATACACTTGGTTTTGGAAGAGTTGAATAAACAGATTGTTGAAGCTGATCTTGAAGGTATAATATCAACCGCTCACATTGGATATTGA 1248 43.59 MTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNKQIVEADLEGIISTAHIGY* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20634737 20636997 + CsaV3_5G025500.1 Csa05g01731 530118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01731 415 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 259 283 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 55 79 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 159 184 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 27 51 IPR002885 -
Csa05g01731 415 Pfam PPR repeat 87 112 IPR002885 -
Csa05g01731 415 Coils Coil 385 405 - -
Csa05g01731 415 Gene3D Tetratricopeptide repeat domain 239 405 IPR011990 GO:0005515
Csa05g01731 415 Gene3D Tetratricopeptide repeat domain 8 141 IPR011990 GO:0005515
Csa05g01731 415 Gene3D Tetratricopeptide repeat domain 142 237 IPR011990 GO:0005515
Csa05g01731 415 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 398 - -
Csa05g01731 415 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 398 - -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 55 79 IPR002885 -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 88 120 IPR002885 -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 160 185 IPR002885 -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Csa05g01731 415 TIGRFAM PPR: pentatricopeptide repeat domain 222 249 IPR002885 -
Csa05g01731 415 Pfam E motif 308 366 IPR046848 -
Csa05g01731 415 SUPERFAMILY TPR-like 64 345 IPR011990 GO:0005515
Csa05g01731 415 Pfam PPR repeat family 185 232 IPR002885 -
Csa05g01731 415 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01731 Csa-Chr5:20634737 Csa01g02506 Csa-Chr1:22123507 4.96E-24 dispersed
Csa05g01731 Csa-Chr5:20634737 Csa01g00108 Csa-Chr1:617649 4.77E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01731 - - csv:101218858 837.025