Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01732 ATGGGGCACCAATTTCCATTCATACCGTTCTCCTTCATCCTCTTCCTTTTTGCTCTTCCTCATCAATCTGTTCTCTGCAAAACCTTGAAGCGGGATGTGAAAGCTTTGACTGAAATCAAAGCCTCTCTCGGCTGGAGAGTGGTGTATTCCTGGGTAGGAGATGATCCCTGTGGTGCTTCTCACCTTCCACCCTGGTCCGGCGTTACCTGTTCCACTCAAGGAGATTACAGAGTCGTCACTGAATTAGAAGTCTATGCGGTTTCTATTGTTGGACCTTTTCCTGTTGCGGTTACCAATCTCTTGGACCTTACTAGGCTGGATCTTCATAATAACAAGTTGACTGGACCAATTCCTCCTCAAATTGGACGGTTAAGACGTCTCAAAATACTGAATTTAAGGTGGAATAAACTTCAAGATGTCATCCCTCCTGAGATTGGTGCACTAAAGGGCCTAACTCATTTATATTTGGGTTTCAATAATTTCAAAGGAGAAATCCCCAAAGAACTTGTTACTCTACGGGAGCTCCGCTATCTCCATTTAAATGAAAATCGCCTTTCAGGGAAAATTCCTCCTGAACTGGGCACCCTACCCAATCTTCGGCAACTGGATCTTGGCAACAACCATTTAGTAGGAACCATAAGGGAGCTGATTCGCCTTGAGGGCTGTTTTCCATCACTCCGCAACCTGTACATCAACAATAATTATTTTACGGGAGGAGTTCCATCACAGCTTGCAAACCTGACTAACTTGGAAATTCTGTACCTCTCCTACAACAAGATGTCTGGGATAATACCACCTGGGGTTGCTCATATACCTAAGTTGACCTATCTGTACTTGGATCACAACCAATTTAGTGGAAGAATCCCTGATGCCTTCTATAAACACCCATTCTTAAAAGAGATGTACATTGAAGGAAATGCATTTCGGCAAGGTGTGAAGCCAATAGGTTTCCACAAGGTTCTTGAAGTTTCTGATGCTGAATTCCTTGTTTAG 993 43.5 MGHQFPFIPFSFILFLFALPHQSVLCKTLKRDVKALTEIKASLGWRVVYSWVGDDPCGASHLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPVAVTNLLDLTRLDLHNNKLTGPIPPQIGRLRRLKILNLRWNKLQDVIPPEIGALKGLTHLYLGFNNFKGEIPKELVTLRELRYLHLNENRLSGKIPPELGTLPNLRQLDLGNNHLVGTIRELIRLEGCFPSLRNLYINNNYFTGGVPSQLANLTNLEILYLSYNKMSGIIPPGVAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRQGVKPIGFHKVLEVSDAEFLV* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20638434 20642507 - CsaV3_5G025510.1 Csa05g01732 530119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01732 330 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Csa05g01732 330 Gene3D Ribonuclease Inhibitor 25 219 IPR032675 -
Csa05g01732 330 Gene3D Ribonuclease Inhibitor 220 328 IPR032675 -
Csa05g01732 330 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Csa05g01732 330 SUPERFAMILY L domain-like 61 309 - -
Csa05g01732 330 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 10 329 - -
Csa05g01732 330 PRINTS Leucine-rich repeat signature 103 116 - -
Csa05g01732 330 PRINTS Leucine-rich repeat signature 196 209 - -
Csa05g01732 330 SMART LRR_typ_2 124 148 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 100 123 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 247 270 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 271 295 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 172 194 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 196 219 IPR003591 -
Csa05g01732 330 Pfam Leucine rich repeat 150 209 IPR001611 GO:0005515
Csa05g01732 330 Pfam Leucine rich repeat 224 284 IPR001611 GO:0005515
Csa05g01732 330 Pfam Leucine Rich repeat 125 140 IPR001611 GO:0005515
Csa05g01732 330 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 10 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01732 Csa-Chr5:20638434 Csa05g02499 Csa-Chr5:26643635 0 dispersed
Csa05g01732 Csa-Chr5:20638434 Csa06g03298 Csa-Chr6:27643194 1.93E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01732 - - csv:101208963 665.611