Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01732 ATGGGGCACCAATTTCCATTCATACCGTTCTCCTTCATCCTCTTCCTTTTTGCTCTTCCTCATCAATCTGTTCTCTGCAAAACCTTGAAGCGGGATGTGAAAGCTTTGACTGAAATCAAAGCCTCTCTCGGCTGGAGAGTGGTGTATTCCTGGGTAGGAGATGATCCCTGTGGTGCTTCTCACCTTCCACCCTGGTCCGGCGTTACCTGTTCCACTCAAGGAGATTACAGAGTCGTCACTGAATTAGAAGTCTATGCGGTTTCTATTGTTGGACCTTTTCCTGTTGCGGTTACCAATCTCTTGGACCTTACTAGGCTGGATCTTCATAATAACAAGTTGACTGGACCAATTCCTCCTCAAATTGGACGGTTAAGACGTCTCAAAATACTGAATTTAAGGTGGAATAAACTTCAAGATGTCATCCCTCCTGAGATTGGTGCACTAAAGGGCCTAACTCATTTATATTTGGGTTTCAATAATTTCAAAGGAGAAATCCCCAAAGAACTTGTTACTCTACGGGAGCTCCGCTATCTCCATTTAAATGAAAATCGCCTTTCAGGGAAAATTCCTCCTGAACTGGGCACCCTACCCAATCTTCGGCAACTGGATCTTGGCAACAACCATTTAGTAGGAACCATAAGGGAGCTGATTCGCCTTGAGGGCTGTTTTCCATCACTCCGCAACCTGTACATCAACAATAATTATTTTACGGGAGGAGTTCCATCACAGCTTGCAAACCTGACTAACTTGGAAATTCTGTACCTCTCCTACAACAAGATGTCTGGGATAATACCACCTGGGGTTGCTCATATACCTAAGTTGACCTATCTGTACTTGGATCACAACCAATTTAGTGGAAGAATCCCTGATGCCTTCTATAAACACCCATTCTTAAAAGAGATGTACATTGAAGGAAATGCATTTCGGCAAGGTGTGAAGCCAATAGGTTTCCACAAGGTTCTTGAAGTTTCTGATGCTGAATTCCTTGTTTAG 993 43.5 MGHQFPFIPFSFILFLFALPHQSVLCKTLKRDVKALTEIKASLGWRVVYSWVGDDPCGASHLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPVAVTNLLDLTRLDLHNNKLTGPIPPQIGRLRRLKILNLRWNKLQDVIPPEIGALKGLTHLYLGFNNFKGEIPKELVTLRELRYLHLNENRLSGKIPPELGTLPNLRQLDLGNNHLVGTIRELIRLEGCFPSLRNLYINNNYFTGGVPSQLANLTNLEILYLSYNKMSGIIPPGVAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRQGVKPIGFHKVLEVSDAEFLV* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20638434 20642507 - CsaV3_5G025510.1 Csa05g01732 530119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01732 330 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Csa05g01732 330 Gene3D Ribonuclease Inhibitor 25 219 IPR032675 -
Csa05g01732 330 Gene3D Ribonuclease Inhibitor 220 328 IPR032675 -
Csa05g01732 330 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Csa05g01732 330 SUPERFAMILY L domain-like 61 309 - -
Csa05g01732 330 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 10 329 - -
Csa05g01732 330 PRINTS Leucine-rich repeat signature 103 116 - -
Csa05g01732 330 PRINTS Leucine-rich repeat signature 196 209 - -
Csa05g01732 330 SMART LRR_typ_2 124 148 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 100 123 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 247 270 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 271 295 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 172 194 IPR003591 -
Csa05g01732 330 SMART LRR_typ_2 196 219 IPR003591 -
Csa05g01732 330 Pfam Leucine rich repeat 150 209 IPR001611 GO:0005515
Csa05g01732 330 Pfam Leucine rich repeat 224 284 IPR001611 GO:0005515
Csa05g01732 330 Pfam Leucine Rich repeat 125 140 IPR001611 GO:0005515
Csa05g01732 330 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 10 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01732 - - - csv:101208963 665.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01732 Csa-Chr5:20638434 Csa05g02499 Csa-Chr5:26643635 0 dispersed
Csa05g01732 Csa-Chr5:20638434 Csa06g03298 Csa-Chr6:27643194 1.93E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g53 . . . . . . . Bma15g00135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01732 Chy09g00673 Cme09g00691
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002810 1 3 0 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 3 1 2 1 2 2 2 2 2 3 5 1 56