Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01752 | ATGTCCATCTCTTCTTCCTCCGACTGCTTCATTGACTCTCACTTACTCTGTGATGAAGACTCCTCCGGTATTTTGTCCGGAGACTTACTGGAGTACTCCTCTGACCTTGAATCGCCGGCCAGCAGTGAGGATTCTATCGCCAGTTTCATAGAGGACGAGAGGCACTTCGTTCCTGGAATTGATTATTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGATTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTACTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTTACACCATTCAGCTTTATCGGATTCTTCGCTTACAAAGTCGATCCTACAGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATCATTCTCTCCAATACTCGAGACGCTACTTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCTGCTTTACTTTGTGCGGCAAATGAAATTCCCAATTTGACCCTCTTGAATCCTGAACATGCCCAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATAGTTGGGTGTTATCGGTTGATGCAACCGTTGACATTGGAGAGTCGTCGGAGGAAGGCACCGAAAGTGATACCGCAGCTCCGAGTGAGAGTCCGAGCTGGGTTGAGATACAGTGACTCGTCATCCTCTTCGTCCTCATCAAGGCTACCTTTTAAAAGGAGGAAGTTAAATAATTGCGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA | 1008 | 45.83 | MSISSSSDCFIDSHLLCDEDSSGILSGDLLEYSSDLESPASSEDSIASFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNTRDATFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAQSWCNGLSKDKIVGCYRLMQPLTLESRRRKAPKVIPQLRVRVRAGLRYSDSSSSSSSSRLPFKRRKLNNCVWVEDDKENSKFRADE* | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 20838859 | 20844306 | + | CsaV3_5G025710.1 | Csa05g01752 | 530139 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01752 | 335 | Gene3D | - | 59 | 176 | - | - | |
Csa05g01752 | 335 | ProSitePatterns | Cyclins signature. | 76 | 107 | IPR006671 | - | |
Csa05g01752 | 335 | Pfam | Cyclin, C-terminal domain | 178 | 282 | IPR004367 | - | |
Csa05g01752 | 335 | CDD | CYCLIN | 76 | 168 | IPR013763 | - | |
Csa05g01752 | 335 | SMART | cyclin_7 | 81 | 169 | IPR013763 | - | |
Csa05g01752 | 335 | SUPERFAMILY | Cyclin-like | 160 | 282 | IPR036915 | - | |
Csa05g01752 | 335 | SMART | Cyclin_C_2 | 178 | 311 | IPR004367 | - | |
Csa05g01752 | 335 | PANTHER | CYCLINS | 24 | 318 | IPR039361 | - | |
Csa05g01752 | 335 | Pfam | Cyclin, N-terminal domain | 46 | 175 | IPR006671 | - | |
Csa05g01752 | 335 | Gene3D | - | 48 | 239 | - | - | |
Csa05g01752 | 335 | PANTHER | CYCLIN-D1-1 | 24 | 318 | - | - | |
Csa05g01752 | 335 | SUPERFAMILY | Cyclin-like | 39 | 175 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g00014 | Csa-Chr4:114793 | Csa05g01752 | Csa-Chr5:20838859 | 9.40E-60 | dispersed | |
Csa04g01509 | Csa-Chr4:14774898 | Csa05g01752 | Csa-Chr5:20838859 | 1.25E-24 | dispersed | |
Csa05g01752 | Csa-Chr5:20838859 | Csa05g02366 | Csa-Chr5:25920091 | 6.08E-155 | dispersed | |
Csa05g01752 | Csa-Chr5:20838859 | Csa02g02191 | Csa-Chr2:19704671 | 6.27E-54 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01752 | K18810 | - | csv:101210686 | 647.121 |