Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01752 ATGTCCATCTCTTCTTCCTCCGACTGCTTCATTGACTCTCACTTACTCTGTGATGAAGACTCCTCCGGTATTTTGTCCGGAGACTTACTGGAGTACTCCTCTGACCTTGAATCGCCGGCCAGCAGTGAGGATTCTATCGCCAGTTTCATAGAGGACGAGAGGCACTTCGTTCCTGGAATTGATTATTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGATTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTACTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTTACACCATTCAGCTTTATCGGATTCTTCGCTTACAAAGTCGATCCTACAGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATCATTCTCTCCAATACTCGAGACGCTACTTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCTGCTTTACTTTGTGCGGCAAATGAAATTCCCAATTTGACCCTCTTGAATCCTGAACATGCCCAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATAGTTGGGTGTTATCGGTTGATGCAACCGTTGACATTGGAGAGTCGTCGGAGGAAGGCACCGAAAGTGATACCGCAGCTCCGAGTGAGAGTCCGAGCTGGGTTGAGATACAGTGACTCGTCATCCTCTTCGTCCTCATCAAGGCTACCTTTTAAAAGGAGGAAGTTAAATAATTGCGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 45.83 MSISSSSDCFIDSHLLCDEDSSGILSGDLLEYSSDLESPASSEDSIASFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNTRDATFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAQSWCNGLSKDKIVGCYRLMQPLTLESRRRKAPKVIPQLRVRVRAGLRYSDSSSSSSSSRLPFKRRKLNNCVWVEDDKENSKFRADE* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20838859 20844306 + CsaV3_5G025710.1 Csa05g01752 530139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01752 335 Gene3D - 59 176 - -
Csa05g01752 335 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Csa05g01752 335 Pfam Cyclin, C-terminal domain 178 282 IPR004367 -
Csa05g01752 335 CDD CYCLIN 76 168 IPR013763 -
Csa05g01752 335 SMART cyclin_7 81 169 IPR013763 -
Csa05g01752 335 SUPERFAMILY Cyclin-like 160 282 IPR036915 -
Csa05g01752 335 SMART Cyclin_C_2 178 311 IPR004367 -
Csa05g01752 335 PANTHER CYCLINS 24 318 IPR039361 -
Csa05g01752 335 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Csa05g01752 335 Gene3D - 48 239 - -
Csa05g01752 335 PANTHER CYCLIN-D1-1 24 318 - -
Csa05g01752 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00014 Csa-Chr4:114793 Csa05g01752 Csa-Chr5:20838859 9.40E-60 dispersed
Csa04g01509 Csa-Chr4:14774898 Csa05g01752 Csa-Chr5:20838859 1.25E-24 dispersed
Csa05g01752 Csa-Chr5:20838859 Csa05g02366 Csa-Chr5:25920091 6.08E-155 dispersed
Csa05g01752 Csa-Chr5:20838859 Csa02g02191 Csa-Chr2:19704671 6.27E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01752 K18810 - csv:101210686 647.121