Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01754 ATGTCCTCATCGCTCTGTTTCTCAATTCCGGCATTGACGCCGCACTACTGGCGCCCGAAGAACTTCAGATTTTTCCTTTTACTTCAATCAAACCGATGTATTTGCTTCGCACCTCGCTTCGTTGCTTCCTTGAACAACGACGACTCTGTTGCAATACCCAAACCTGCTCCGCTGGCTTTCGATCCCGCGGAGGAGCTGTACGGACTTGACGTCGATTTAAAACCCAGGAATTCAGCTTCTAGCGCACCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAAAGAATTACCATGTCCAAGTTGCCGAGGTAGGGGTTATGCGCCTTGTACGGAATGTGGAATTGAAAGATCCCGTGCTGACTGTTCTGTGTGTAATGGAAAGGGTATAGTGACCTGCCACCAATGTTTGGGGGATCGTGTCATATGGGAAGAGTCCATTGATGAAAGACCATGGGAGAAAGCACGCTCCACTTCTCCTTTAAGAATGAAGGAGGATGATGAAGTCGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCGAAGCGTGTTTACCAATCACCTCCTCCTGAAGTTGGTTTAAAGATCAGTCGATCATTAAAAATTCTCAATGCCAAAACAGGTATATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCTGCTCTTCATGCTCAGAGAGTGGCTGCAATTAAGAAAGCCAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAGGCTTTGAAAGCATTCTTTAGTGACCCAGAAAACCGTAGAAAGCGGAGCAGTGCAATGAAAGGAGTGAAATTTTACTGTAAAAACTGTGGCCGTGAAGGGCATCGAAGACACTATTGCCCCGAACTTAAGGAAGATTCCATCGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACAGGAAGACTTGTGAGAAGTCTGGGTTGAATGTTACACCAATAACCGCAACAATTCAGCGTCACTGTGGGATATGTGGTTTGAAGGGCCACAACAAGAGGAACTGTCAGAAGTCCGATGCACATCGTCAGAGCCATCAAAACGTGTTGAGGCCGAACTTGATAAGTGAATACAGGGCGAGCAATGAAAATAGGAGAGTGAGGCAGTATCATTGTAGGATTTGCAAGGAAAGCGGGCACAGTCAACGGAATTGTCCCAGTACTGATCGGGAAGGCAATGGTCTGAGTACTAGAAGATCATACAGTTGCAAACTTTGTCATGAAAAAGGGCACAATATTAGGACATGCCCAAATAGAAGTACGAATAATCTACAGAAAAATCCTCCTGTTGCTTTAAACCAATAA 1335 44.87 MSSSLCFSIPALTPHYWRPKNFRFFLLLQSNRCICFAPRFVASLNNDDSVAIPKPAPLAFDPAEELYGLDVDLKPRNSASSAPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCNGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKILNAKTGIFSKRMKIIHRDPALHAQRVAAIKKAKGSAEARKRTSEALKAFFSDPENRRKRSSAMKGVKFYCKNCGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRKTCEKSGLNVTPITATIQRHCGICGLKGHNKRNCQKSDAHRQSHQNVLRPNLISEYRASNENRRVRQYHCRICKESGHSQRNCPSTDREGNGLSTRRSYSCKLCHEKGHNIRTCPNRSTNNLQKNPPVALNQ* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20880292 20890478 - CsaV3_5G025730.1 Csa05g01754 530141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01754 444 Pfam Zinc knuckle 409 428 IPR025829 -
Csa05g01754 444 ProSiteProfiles Zinc finger CCHC-type profile. 275 290 IPR001878 GO:0003676|GO:0008270
Csa05g01754 444 ProSiteProfiles Zinc finger CCHC-type profile. 382 397 IPR001878 GO:0003676|GO:0008270
Csa05g01754 444 Coils Coil 164 184 - -
Csa05g01754 444 ProSiteProfiles Zinc finger CCHC-type profile. 301 317 IPR001878 GO:0003676|GO:0008270
Csa05g01754 444 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 371 432 - -
Csa05g01754 444 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 12 355 - -
Csa05g01754 444 Gene3D - 377 438 - -
Csa05g01754 444 Gene3D - 272 323 - -
Csa05g01754 444 SUPERFAMILY Retrovirus zinc finger-like domains 272 318 IPR036875 GO:0003676|GO:0008270
Csa05g01754 444 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 12 355 - -
Csa05g01754 444 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 371 432 - -
Csa05g01754 444 SUPERFAMILY Retrovirus zinc finger-like domains 371 430 IPR036875 GO:0003676|GO:0008270
Csa05g01754 444 SMART c2hcfinal6 274 290 IPR001878 GO:0003676|GO:0008270
Csa05g01754 444 SMART c2hcfinal6 301 317 IPR001878 GO:0003676|GO:0008270
Csa05g01754 444 SMART c2hcfinal6 381 397 IPR001878 GO:0003676|GO:0008270
Csa05g01754 444 SMART c2hcfinal6 332 348 IPR001878 GO:0003676|GO:0008270
Csa05g01754 444 SMART c2hcfinal6 412 428 IPR001878 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01754 - - csv:101211176 922.539