Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01755 ATGGCTTCCAACACCTTGATGAGCTGTGGCATTGCCACCACCGCTTTCCCTTCAGTCCTTTCTTCTTCTAAGTCTAAATTCGCTGTCGGTGTCCCCATTTCCGGTGTCGCTGTCAATGCATCTTCCCGATTTTCCATGTCCGCTGAGTGGATGCCCGGCCAGCCCCGTCCCCCCTACCTCGATGGCTCAGCTCCTGGTGATTTTGGATTCGACCCTCTTGGGCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGATTGGGCAACTGGGTTAAAGCTCAAGAATGGGCAGCAGTTCCAGGAGGCCAAGCTACATACTTGGGACAACCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCTTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGATCCATTAGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTCGATTGGCGCTATTGGCTTTTGTTGGTTTCTGTGTATTAAATCTGAACTCAAGGCTTTCCTCTCTATGTGCCTTTGAACGTGCTCTGTAA 681 49.93 MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVLNLNSRLSSLCAFERAL* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20901153 20903459 - CsaV3_5G025740.1 Csa05g01755 530142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01755 226 Pfam Chlorophyll A-B binding protein 57 209 IPR022796 -
Csa05g01755 226 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 32 209 IPR001344 GO:0009765|GO:0016020
Csa05g01755 226 SUPERFAMILY Chlorophyll a-b binding protein 40 212 - -
Csa05g01755 226 Gene3D Chlorophyll a/b binding protein domain 51 220 - -
Csa05g01755 226 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC 32 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01602 Csa-Chr4:15434949 Csa05g01755 Csa-Chr5:20901153 3.26E-39 dispersed
Csa05g01755 Csa-Chr5:20901153 Csa05g02208 Csa-Chr5:24869407 2.87E-35 dispersed
Csa05g01755 Csa-Chr5:20901153 Csa01g00560 Csa-Chr1:3626647 4.27E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01755 K08907 - csv:101211428 429.869