Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01771 ATGGGTAAGGAAAAGACTCACATCAACATTGTGGTCATTGGTCATGTCGACTCTGGCAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTGTTGGACAAACTTAAGGCCGAACGTGAGCGTGGTATCACAATTGATATTGCTCTGTGGAAGTTCGAGACCACCAAGTATTACTGCACTGTGATTGATGCCCCTGGGCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTTCTTATTATCGACTCCACTACTGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCCTTTACCCTTGGTGTCAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACCACGCCCAAGTACTCGAAATCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGAAAAAATTCCCTTCGTCCCCATCTCTGGCTTTGAGGGTGACAACATGATTGAAAGATCCACCAACCTCGACTGGTACAAGGGACCGACCCTTCTTGAGGCTCTCGATCTGATCCAAGAGCCTAAGAGGCCATCTGACAAACCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTTCCAGTGGGTCGTGTTGAAACTGGCATTATAAAGCCTGGTATGGTGGTAACCTTTGCTCCATCTGGACTGACTACTGAAGTTAAGTCTGTGGAGATGCACCACGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTATGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACGTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCACCTGTACTCGATTGCCACACATCTCACATTGCTGTCAAATTTGCCGAGATTTTAACTAAGATTGACAGGCGATCTGGTAAAGAACTGGAGAAAGAGCCCAAGTTTTTGAAGAACGGAGATGCTGGATTTGTTAAGATGATTCCCACCAAGCCTATGGTGGTGGAAACATTCTCTGCGTATCCCCCTCTTGGACGATTTGCCGTGAGGGACATGCGTCAAACCGTGGCTGTTGGTGTCATCAAGGCCGTTGAGAAGAAGGATGCATCGGGCGCCAAGGTCACCAAGTCTGCAGCAAAGAAATCAGGGAAGTGA 1350 47.26 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTKSAAKKSGK* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21083649 21085086 - CsaV3_5G025900.1 Csa05g01771 530158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01771 449 PANTHER TRANSLATION FACTOR 1 447 - -
Csa05g01771 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Csa05g01771 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Csa05g01771 449 Gene3D Translation factors 323 430 - -
Csa05g01771 449 Gene3D - 1 226 IPR027417 -
Csa05g01771 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Csa05g01771 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Csa05g01771 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Csa05g01771 449 CDD EF1_alpha_II 230 320 - -
Csa05g01771 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Csa05g01771 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Csa05g01771 449 CDD EF1_alpha_III 323 426 - -
Csa05g01771 449 Pfam Elongation factor Tu GTP binding domain 5 221 IPR000795 GO:0003924|GO:0005525
Csa05g01771 449 CDD EF1_alpha 9 227 - -
Csa05g01771 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Csa05g01771 449 Gene3D Translation factors 229 316 - -
Csa05g01771 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Csa05g01771 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Csa05g01771 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Csa05g01771 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Csa05g01771 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Csa05g01771 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Csa05g01771 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00700 Csa-Chr1:4428900 Csa05g01771 Csa-Chr5:21083649 6.77E-95 dispersed
Csa03g04393 Csa-Chr3:38342441 Csa05g01771 Csa-Chr5:21083649 4.00E-96 dispersed
Csa05g01771 Csa-Chr5:21083649 Csa05g01774 Csa-Chr5:21096530 0 dispersed
Csa05g01771 Csa-Chr5:21083649 Csa05g01773 Csa-Chr5:21091875 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01771 K03231 - csv:101220517 900.968